View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_high_13 (Length: 370)

Name: NF19069_high_13
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_high_13
NF19069_high_13
[»] chr1 (12 HSPs)
chr1 (30-355)||(3378928-3379253)
chr1 (49-256)||(2006737-2006944)
chr1 (30-262)||(3372970-3373202)
chr1 (34-158)||(2012328-2012452)
chr1 (172-262)||(3341394-3341484)
chr1 (107-208)||(4334599-4334700)
chr1 (223-353)||(3341007-3341130)
chr1 (307-354)||(3340856-3340903)
chr1 (307-354)||(3361913-3361960)
chr1 (68-153)||(2010923-2011008)
chr1 (111-211)||(3362049-3362149)
chr1 (307-354)||(3349580-3349627)
[»] chr2 (4 HSPs)
chr2 (130-262)||(20953272-20953404)
chr2 (161-262)||(39274332-39274433)
chr2 (311-354)||(39274247-39274290)
chr2 (111-215)||(20927397-20927501)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 355
Target Start/End: Complemental strand, 3379253 - 3378928
Alignment:
Q  30 caaattgctagagcgtccgtgcaatcttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttcca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379253 caaattgctagagcgtccgtgcaatcttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttcca 3379154  T
Q  130 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3379153 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttccaacaatgccaaat 3379054  T
Q  230 cttcaagtagagggcagccagatatcatgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379053 cttcaagtagagggcagccagatatcatgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagc 3378954  T
Q  330 cttcaaatattgttggaggtttaagt 355  Q
    ||||||||||||||||||||||||||    
T  3378953 cttcaaatattgttggaggtttaagt 3378928  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 2006944 - 2006737
Alignment:
Q  49 tgcaatcttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatt 148  Q
    |||||||| ||||||||| |||||||| ||||||| | | |||||||||||||||||| |  |||||||||| ||||  ||||| |||||||||||||||    
T  2006944 tgcaatctactttgattgctttcagagttcaaatacaaacttaaatcaacaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatt 2006845  T
Q  149 taccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagcc 248  Q
    ||||||  || |  |||||||| |||||||||||||||   || ||||| ||||||||||||| |||   ||||| ||||| |||||| |||||||| |     
T  2006844 taccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaact 2006745  T
Q  249 agatatca 256  Q
    ||||||||    
T  2006744 agatatca 2006737  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 3373202 - 3372970
Alignment:
Q  30 caaattgctagagcgtccgtgcaatcttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttcca 129  Q
    |||||||||||||| ||| |||||| | ||||||||| |||  ||| ||| ||||||| ||||||||||| ||||  ||  || |||| || |||||  |    
T  3373202 caaattgctagagcatccatgcaatttactttgattgcttttggagttcagataaatacttaaatcaacatatactgtatatatttgggaactgttttga 3373103  T
Q  130 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaat 229  Q
    ||| ||||||||||||||||||||  || || ||||    | ||||||||||||||| |||||||||||| ||| ||||||| ||  | |||| ||||||    
T  3373102 aagctaatatcctcaaatttaccataaaattgaaaagtactgagatttggtgcgtgaacattaatttgtgagaagccatcaattttcatcaataccaaat 3373003  T
Q  230 cttcaagtagagggcagccagatatcatgtttt 262  Q
      |||||||||||||||||||||||||||||||    
T  3373002 ggtcaagtagagggcagccagatatcatgtttt 3372970  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 2012452 - 2012328
Alignment:
Q  34 ttgctagagcgtccgtgcaatcttctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagt 133  Q
    ||||| |||| ||| |||||||| || |||||| |||||||| ||||| | | | |||||||||||| ||||| | ||||| || || ||||| |||||     
T  2012452 ttgctggagcttccttgcaatctactatgattgctttcagagttcaaacacaaacttaaatcaacaattacataatttaataggtaagtgttttcaaagc 2012353  T
Q  134 taatatcctcaaatttaccaccaat 158  Q
    |||||||||||||||||||| ||||    
T  2012352 taatatcctcaaatttaccaacaat 2012328  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 3341484 - 3341394
Alignment:
Q  172 agatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtttt 262  Q
    ||||||||||| |||  |||||| ||||| |||||||||| |||   ||||| ||| ||||||||||| ||||||| ||||||||||||||    
T  3341484 agatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatcatgtttt 3341394  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 4334599 - 4334700
Alignment:
Q  107 tagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaacc 206  Q
    |||||||||||||| |||| |||||| ||| | ||||||||| |||| | |||| ||||| ||| ||||||||||| |||  ||||||||| || |||||    
T  4334599 tagttaattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaacc 4334698  T
Q  207 at 208  Q
    ||    
T  4334699 at 4334700  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 3341130 - 3341007
Alignment:
Q  223 gccaaatcttcaagtagagggcagccagatatcatgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattc 322  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||||       ||||||| |||| |||| ||    | |  ||||||||||||||||    
T  3341130 gccaattcttcaagcagagggcagccagatatcatgttttcaaatgca-------tcttgagtcattctaacgacagacaaagaaagacttttcaaattc 3341038  T
Q  323 ttgaagccttcaaatattgttggaggtttaa 353  Q
      ||||||||||||| |||||||||||||||    
T  3341037 cggaagccttcaaatgttgttggaggtttaa 3341007  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 3340903 - 3340856
Alignment:
Q  307 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 354  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  3340903 aagacttttcaaattccggaagccttcaaatgttgttggaggtttaag 3340856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 3361960 - 3361913
Alignment:
Q  307 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 354  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||    
T  3361960 aagacttttcaagttcttgaagccttcaaacgttgttggaggtttaag 3361913  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 2011008 - 2010923
Alignment:
Q  68 tttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttacca 153  Q
    |||||||| ||||||| | | |||||||||||  ||||  |||||||| |||| |||||  |||| ||||||||||||||||||||    
T  2011008 tttcagagttcaaatacaaacttaaatcaacagctacacaagttaatttgaaagtgtttataaagctaatatcctcaaatttacca 2010923  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 3362149 - 3362049
Alignment:
Q  111 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 210  Q
    |||| ||||| ||||| ||||| ||||||||||||||| |||||  || | |  |||||||||||||||| ||||   |||||||||  |||||||||||    
T  3362149 taatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatca 3362050  T
Q  211 a 211  Q
    |    
T  3362049 a 3362049  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 3349627 - 3349580
Alignment:
Q  307 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 354  Q
    ||||||||||| ||||  |||||||||||| |||||||||||||||||    
T  3349627 aagacttttcagattccggaagccttcaaaaattgttggaggtttaag 3349580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 20953404 - 20953272
Alignment:
Q  130 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaat 229  Q
    ||||||||| ||||| |||  ||| ||||||  |||| ||| |||||||||||  ||  ||||||||| ||||||||||||||||| | ||||  ||| |    
T  20953404 aagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatcaacttctatcaatttcaatt 20953305  T
Q  230 cttcaagtagagggcagccagatatcatgtttt 262  Q
     |||||| |||||||||||||| |||| |||||    
T  20953304 tttcaagcagagggcagccagagatcaagtttt 20953272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 39274433 - 39274332
Alignment:
Q  161 taaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtt 260  Q
    |||||| ||||||||||||||| |||  ||||| ||| || |||||||||  ||| | |||   ||||| |||||||||||||||||| |||||||| ||    
T  39274433 taaaaaacttcagatttggtgcatgaatattaacttgggttaaaccatcaggttctatcaaactcaaatattcaagtagagggcagccggatatcatttt 39274334  T
Q  261 tt 262  Q
    ||    
T  39274333 tt 39274332  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 39274290 - 39274247
Alignment:
Q  311 cttttcaaattcttgaagccttcaaatattgttggaggtttaag 354  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||    
T  39274290 cttttcaagttcctgaagccttcaaatgttgttggaggtttaag 39274247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 20927501 - 20927397
Alignment:
Q  111 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 210  Q
    |||||||||| | ||| ||||||||||||||||| ||| ||||   ||||| |||| ||| |||||||||||  |   ||||| ||| ||||| ||||||    
T  20927501 taattggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 20927402  T
Q  211 acttc 215  Q
    |||||    
T  20927401 acttc 20927397  T

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