View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_2 (Length: 697)
Name: NF19069_high_2
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 269 - 652
Target Start/End: Original strand, 41115601 - 41115984
Alignment:
| Q |
269 |
tcatagcaaatgattttaatagcaaataatatccattagcattattgtatttatttgaaatgctgttatacatagaggtgaatgtggtctgatttagaca |
368 |
Q |
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| T |
41115601 |
tcatagcaaatgattttaatagcaaataatatccattagcattattgtatttatttgaaatgctgttatacatagaggtgaatgtggtctgatttagaca |
41115700 |
T |
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| Q |
369 |
cagaagttgcaaattctagacaaataaaaggtatacaaagagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctgt |
468 |
Q |
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| T |
41115701 |
cagaagttgcaaattctagacaaataaaaggtatacaaagagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctgt |
41115800 |
T |
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| Q |
469 |
cctattattttctacctgcaaaaaggtaaacaacatacaaattaattaagagattcatataaggaagagttaaagttannnnnnnaataattccaggcag |
568 |
Q |
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| T |
41115801 |
cctattattttctacctgcaaaaaggtaaacaacatacaaattaattaagagattcatataaggaagagttaaagttatttttttaataattccaggcag |
41115900 |
T |
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| Q |
569 |
ctttggacaaaaaggcttactatactaaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacag |
652 |
Q |
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| T |
41115901 |
ctttggacaaaaaggcatactataataaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacag |
41115984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 41115345 - 41115531
Alignment:
| Q |
11 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
110 |
Q |
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| T |
41115345 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagtt--gtattcttgaagtgctaggt |
41115442 |
T |
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| Q |
111 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
199 |
Q |
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| T |
41115443 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgctaccaacatgaatg |
41115531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 41101806 - 41101978
Alignment:
| Q |
11 |
acatcatcacgagttttaccagggttctgagctagggaagccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgctaggt |
110 |
Q |
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| T |
41101806 |
acatcatcacgagttttaccagggttctgaactacggaggccaatgctgcaaactgctcggtcatatttgtagcagttttgtattcttgaagtgcaaggt |
41101905 |
T |
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| Q |
111 |
tcgtgaattcttgatcctcaagggatgcaagataagctaacaatcagagaaaaacaaaaattagagatgacctgc |
185 |
Q |
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| T |
41101906 |
tggtgaattcttgatcctcaagggatgcaagataagctgccaatc--aaacaaacaaaaattagatatgatctgc |
41101978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 390 - 501
Target Start/End: Original strand, 41102145 - 41102262
Alignment:
| Q |
390 |
aaataaaaggtatacaa---agagcaacattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattgtcctg---tcctattattttctac |
483 |
Q |
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| T |
41102145 |
aaataaaaggtatactaccaagagcaatattcttcaaagctcgtctggccatgtttgaatgatcaaacacatattcgcctgagctcctattattttcaac |
41102244 |
T |
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| Q |
484 |
ctgcaaaaaggtaaacaa |
501 |
Q |
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| T |
41102245 |
ctgcaaaaagggaaacaa |
41102262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 594 - 679
Target Start/End: Original strand, 41102379 - 41102462
Alignment:
| Q |
594 |
taaggaactctgatctcacagttcactcgcaagctgcttcccgatgaaagactcaacagtatgaacagtgtcagggtctgcaactt |
679 |
Q |
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| T |
41102379 |
taaggaactctgatctca--gttcactcgcaagctgcttcctgatgaaagaccgaacagtataaacagcatcagggtctgcaactt |
41102462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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