View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_25 (Length: 288)
Name: NF19069_high_25
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 1091747 - 1091487
Alignment:
| Q |
11 |
agaatatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091747 |
agaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaat |
1091648 |
T |
|
| Q |
111 |
gaaggattttgctttgcttttgtgataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1091647 |
gaaggattttgctttgcttttgtgataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatttgcaaaaactctgttatggcg |
1091548 |
T |
|
| Q |
211 |
gctacaaaagcctattttgttattgttattgttatttttgtatcttcgcttgagaattatt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091547 |
gctacaaaagcctattttgttattgttattgttatttttgtatcttcgcttgagaattatt |
1091487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 36524343 - 36524105
Alignment:
| Q |
11 |
agaatatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaat |
110 |
Q |
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|||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36524343 |
agaaaatcaaatgatagcggatggttatatggtagaaatatgttccacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaat |
36524244 |
T |
|
| Q |
111 |
gaaggattttgctttgcttttgtgataaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcg |
210 |
Q |
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||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||| || | |||||||| ||| |||||| |
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| T |
36524243 |
gaaggattttg---------------aaagta----ttgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcg |
36524163 |
T |
|
| Q |
211 |
gctacaaaagcctattttgttattgttattgttatttttgtatcttcgcttgagaattattt |
272 |
Q |
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| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
36524162 |
gttacaaaagcctttttt----ttgttattgttatttttgtatcttcggttgagaattattt |
36524105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 18096108 - 18095878
Alignment:
| Q |
11 |
agaatatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactgga-ggtatcaagaataaataattcaa |
109 |
Q |
| |
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|||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
18096108 |
agaaaatcaaatgatagcggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattc-a |
18096010 |
T |
|
| Q |
110 |
tgaaggattttgctttgcttttgtgat-aaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatgg |
208 |
Q |
| |
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|||||| |||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
18096009 |
tgaagggtttttctttgcttttgtgataaaaacaggaattgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatgg |
18095910 |
T |
|
| Q |
209 |
cggctacaaaagcctattttgttattgttatt |
240 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
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| T |
18095909 |
cggctacaaaagccttttttgttattgttatt |
18095878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 18100405 - 18100175
Alignment:
| Q |
11 |
agaatatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactgga-ggtatcaagaataaataattcaa |
109 |
Q |
| |
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|||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
18100405 |
agaaaatcaaatgatagcggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattc-a |
18100307 |
T |
|
| Q |
110 |
tgaaggattttgctttgcttttgtgat-aaagcaggatatgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatgg |
208 |
Q |
| |
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|||||| |||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
18100306 |
tgaagggtttttctttgcttttgtgataaaaacaggaattgattagtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatgg |
18100207 |
T |
|
| Q |
209 |
cggctacaaaagcctattttgttattgttatt |
240 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
18100206 |
cggctacaaaagccttttttgttattgttatt |
18100175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 18095891 - 18095853
Alignment:
| Q |
233 |
ttgttattgttatttttgtatcttcgcttgagaattatt |
271 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
18095891 |
ttgttattgttatttttgtatcttcggctgagaattatt |
18095853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 18100188 - 18100150
Alignment:
| Q |
233 |
ttgttattgttatttttgtatcttcgcttgagaattatt |
271 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
18100188 |
ttgttattgttatttttgtatcttcggctgagaattatt |
18100150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 7707428 - 7707531
Alignment:
| Q |
33 |
aattatattgtagaaatatgttccacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttg |
132 |
Q |
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|||||| ||||| |||||||| ||| ||| | |||| | | |||||||||||| |||| ||||| || |||||||||||| ||||| |||| |||||| |
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| T |
7707428 |
aattatgttgtacaaatatgtaccaaatcagtttcagccgaagaggaaactggtggtaataagaaaaagtaattcaatgaataatttttctttccttttg |
7707527 |
T |
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| Q |
133 |
tgat |
136 |
Q |
| |
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|||| |
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|
| T |
7707528 |
tgat |
7707531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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