View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_26 (Length: 278)
Name: NF19069_high_26
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 33554652 - 33554891
Alignment:
| Q |
29 |
gtatgtattttgtcaaaacaaaagtatgcttattaactaaatatatagtggaggacagaaacagaaaccgtcaatataacatatgttcttaagcatgtaa |
128 |
Q |
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| T |
33554652 |
gtatgtattttgtcaaaacaaaagtatgcttattaactaaatatatagtggaggacagaaacagaaaccgtcaatataacatatgttcttaagcatgtaa |
33554751 |
T |
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| Q |
129 |
gaactacatcccatgtaaccnnnnnnncgacatgaaagtatagtttcatacattgcatatataaatttcgactgaactcacacaaacaaatttcgatttg |
228 |
Q |
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| T |
33554752 |
gatctacatcccatgtaaccaaaaaaacgacatgaaagtatagtttcatacattgcatatataaat---gactgaactcacacaaacaaatttcgatttg |
33554848 |
T |
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| Q |
229 |
caacatctaatgcttctggagctcccccaccatcacctctctg |
271 |
Q |
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| T |
33554849 |
caacatctaatgcttctggagctcccccaccatcacctctctg |
33554891 |
T |
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