View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_27 (Length: 274)
Name: NF19069_high_27
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 49553086 - 49553270
Alignment:
| Q |
82 |
tcattgtaaatacatgaaactcaagcattgactacgactgtgctcttttaaacaggacattatattttcccaagcagaacacattctagattgtgcatga |
181 |
Q |
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| T |
49553086 |
tcattgtaaatacatgaaactcaagcattgactacgaccgtgct--tttaaataggacattatatcttcccaagcagaacacattctagattgtgcatga |
49553183 |
T |
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| Q |
182 |
aaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggttacattggacaaaaatgttcttctcac |
268 |
Q |
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| T |
49553184 |
aaacttcgatgaagagatagagggggtccagaacaatgagagatggggttatgtgaaggttaacatggagaaaaatgttcttctcac |
49553270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
164 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
243 |
Q |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 49553025 - 49553060
Alignment:
| Q |
18 |
gtcttccacgtgcctttggaatttccattcatttat |
53 |
Q |
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| T |
49553025 |
gtcttccacgtgcctttggaatttccattcatttat |
49553060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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