View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19069_high_28 (Length: 260)
Name: NF19069_high_28
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_28 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1336296 - 1336545
Alignment:
| Q |
1 |
aataattttaaactctaaacctagtagtaattcgttaattaatttttggtgacaaagctaattggtttatataatgagaatgtaagcttatgtatgtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1336296 |
aataattttaaactctaaacctagtagtaattagttaattaatttttggtgacaaagctaattggtttatataatgagaatgtaagcttatgtat----t |
1336391 |
T |
|
| Q |
101 |
tacatttacatacattagtcgaaattttagatatagtnnnnnnnntattgaatgaaacaaagtcttactttgtgatagcttgacaatatcttcttctgga |
200 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1336392 |
tacatttacatac------cgaaattttagataaagtaaaaaaaatattgaatgaaacaaagtcttactttgtgatagcttgataatatcttcttctgga |
1336485 |
T |
|
| Q |
201 |
agaaaaactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcattt |
260 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1336486 |
acaaatactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcattt |
1336545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 1320682 - 1320783
Alignment:
| Q |
159 |
aaagtcttactttgtgatagcttgacaatatcttcttctggaagaaaaactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcat |
258 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1320682 |
aaagtattactttgtgatagcttgacaatatcttcctctggaacaaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcat |
1320781 |
T |
|
| Q |
259 |
tt |
260 |
Q |
| |
|
|| |
|
|
| T |
1320782 |
tt |
1320783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 1264218 - 1264119
Alignment:
| Q |
161 |
agtcttactttgtgatagcttgacaatatcttcttctggaagaaaaactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcattt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
1264218 |
agtcttactttgtgatagcttgacaatatcttcttctggagcaaaaactttgttaaggatttgaccatttttaagctcccatagtgatatcaactcattt |
1264119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University