View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19069_high_35 (Length: 247)
Name: NF19069_high_35
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5811559 - 5811334
Alignment:
| Q |
1 |
tactaatatctttcaatgattttgtcatttcaattgatcttaatatattaatcatgtgttggttttatcattttattgttattatgttgcagggaggagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5811559 |
tactaatatctttcaatgattttgtcatttcaa---atcttaatatattaatcatgtgttggttttatcattttattgttattatgttgcagggaggaag |
5811463 |
T |
|
| Q |
101 |
aactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttgataaggaaacaaaacgatccaaaggaatagcttatattcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5811462 |
aactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttgataaggaaacaaaacgatccaaaggaatagcttatattcattt |
5811363 |
T |
|
| Q |
201 |
ctcagttccagattttgcagccaggtaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5811362 |
ctcagttccagattttgcagccaggtaat |
5811334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 37743079 - 37742909
Alignment:
| Q |
58 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttg |
157 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
37743079 |
gttggttttatatttttattgttattctgttgcagtgaggaggaattggaagagcatttcagtcagtttggcagtgtctcacaggctcatttggttgttg |
37742980 |
T |
|
| Q |
158 |
ataaggaaacaaaacgatccaaaggaatagcttatattcatttctcagttccagattttgcagccaggtaa |
228 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
37742979 |
ataaggatactaaacgatccaaaggaatagcttatattcatttttcagctccagagtttgcagccaggtaa |
37742909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 37758514 - 37758344
Alignment:
| Q |
58 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttg |
157 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37758514 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttcatttagttgttg |
37758415 |
T |
|
| Q |
158 |
ataaggaaacaaaacgatccaaaggaatagcttatattcatttctcagttccagattttgcagccaggtaa |
228 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
37758414 |
ataaggatacaaagcgatccaaaggaagagcttttattcatttttcagttccagaatttgcagccaggtaa |
37758344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 37764262 - 37764092
Alignment:
| Q |
58 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttg |
157 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37764262 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttcatttagttgttg |
37764163 |
T |
|
| Q |
158 |
ataaggaaacaaaacgatccaaaggaatagcttatattcatttctcagttccagattttgcagccaggtaa |
228 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
37764162 |
ataaggatacaaagcgatccaaaggaagagcttttattcatttttcagttccagaatttgcagccaggtaa |
37764092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 38602054 - 38602224
Alignment:
| Q |
58 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttcatttagttgttg |
157 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
38602054 |
gttggttttatatttttattgttattctgttgcagtgaggaggaactggaagagcatttcagtcagtttggcagtgtctcacaggttcatttgcttgttc |
38602153 |
T |
|
| Q |
158 |
ataaggaaacaaaacgatccaaaggaatagcttatattcatttctcagttccagattttgcagccaggtaa |
228 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
38602154 |
atgaggttacaaaacgatccaaaggaatagcttttattcatttttcagttccagaatttgcagccaggtaa |
38602224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University