View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19069_high_4 (Length: 512)
Name: NF19069_high_4
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Original strand, 38558181 - 38558673
Alignment:
| Q |
20 |
gcatatccttttggggttttacaaagacaatccagaatcttcatcctcatcaagggaggaagcgtatataaaatagagagcccatataagaccgaagaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558181 |
gcatatccttttggggttttacaaagacaatccagaatcttcatcctcatcaagggaggaagcgtatataaaatagagagcccatataagaccgaagaca |
38558280 |
T |
|
| Q |
120 |
ccaaacaaaagccaaccaagaagattgttgctaagtccaaagggaaggccagttccttcagtgctcattctctcatctaccaaagccatggctgctgggc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558281 |
ccaaacaaaagccaaccaagaagattgttgctaagtccaaagggaaggccagttccttcggtgctcattctctcatctaccaaagccatggctgctgggc |
38558380 |
T |
|
| Q |
220 |
ttgacaaggttgcagcagagatagctgctatcaaggatgctcccatacctatgtttgagctgcttccttgcacatcaggctttccctcaatggaacatct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38558381 |
ttgacaaggttgcagcagagatagctgctatcaaggatgctcccatacctatgtttgagctgcttccttgcacatcaggctttccctcaatggaacatct |
38558480 |
T |
|
| Q |
320 |
cactcttccaaccttag---------------ctatacaatttatgtttgaaataaatgaattgttatatcattttgtttgatgaaaatgaaattgttag |
404 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38558481 |
cactcttccaaccttagctattgatggcaatcctatacaatttatgtttgaaataaatgaattgttatgtcattttgtttgatgaaaatgaaattgttag |
38558580 |
T |
|
| Q |
405 |
ttatttcactatgaaaaaacttaccaacaacggtatgggatgagactccaagaggttgcttgtgcacaaaacctgtgcggatgattgaagatg |
497 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38558581 |
ttgattcactatgaaaaaacttaccaacaacggtatgggatgagactccaagaggttgcttgtgcacaaaacttgtgcggatgattgaagatg |
38558673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 48 - 337
Target Start/End: Complemental strand, 31302086 - 31301794
Alignment:
| Q |
48 |
aatccagaatcttcatcctcatcaagggaggaagcgtatataaaatagagagcccatataagaccgaagacaccaaacaaaagccaaccaagaagattgt |
147 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| | ||||| ||||||||||||| |
|
|
| T |
31302086 |
aatccagactcttcatcctcttcaagacccgaagcgtaaataaaatagagagcccagataaaaccgaacacaccaaaaaggagccatccaagaagattgt |
31301987 |
T |
|
| Q |
148 |
tgctaagtccaaagggaaggccagttccttcagtgctcattctctcatctaccaaagccatggctgctgggcttgacaaggttgcagcagagatagctgc |
247 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||| || ||||||| | |||||| |
|
|
| T |
31301986 |
tgctgagtccaaagggaagtccggttccttcagtactcattctttcatccaccaatgccatggctgctgggcttgacatggctgcagcacatgcagctgc |
31301887 |
T |
|
| Q |
248 |
tatcaaggatgctcccatacctatgtttgagctgcttccttgcac---atcaggctttccctcaatggaacatctcactcttccaaccttagc |
337 |
Q |
| |
|
| ||| |||| |||||| || ||||||||| ||||| | | ||| | ||| |||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
31301886 |
aaacaaagatgatcccattccaatgtttgagttgctttcattcactgaagaaggttttccctccattgaacacctcactcttccaaccttagc |
31301794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University