View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_41 (Length: 233)
Name: NF19069_high_41
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_41 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 45169509 - 45169694
Alignment:
| Q |
48 |
gatcatcattatatcacattcatatcctataaaagtttcgggttgctgttctttctgcttgttgtcatatatactggtttgctagacacaggagccgaat |
147 |
Q |
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| T |
45169509 |
gatcatcattatattatattcatatcctatataggtttcaggttgcagttctttctgcttgtagtcatatataccggtttgctagacacaggagccgaat |
45169608 |
T |
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| Q |
148 |
acttctatccaatgaatgaaaaatacagtgtaacaacaacttcaaaacgttatacttgcatgattgatcttcttggcagagttgac |
233 |
Q |
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| T |
45169609 |
acttctatccaatgaatgaagaatacagtgtaacaccaacttcaaaacattatacttgcatgattgatcttcttggcagagttgac |
45169694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 45166721 - 45166863
Alignment:
| Q |
82 |
gtttcgggttgctgttctttctgcttgttgtcatatatactggtttgctagacacaggagccgaatacttctatccaatgaatgaaaaatacagtgtaac |
181 |
Q |
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| T |
45166721 |
gtttcaggttggcgttctttctgcttgtagtcata----ctggcttgctagacaggggaactgaatacttctattcaatgactaaagattatggtgtaat |
45166816 |
T |
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| Q |
182 |
aacaacttcaaaacgttatacttgcatgattgatcttcttggcagag |
228 |
Q |
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| T |
45166817 |
accaacttcaaaacattatacttgcatgattgatcttcttggcagag |
45166863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 45153646 - 45153696
Alignment:
| Q |
178 |
taacaacaacttcaaaacgttatacttgcatgattgatcttcttggcagag |
228 |
Q |
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| T |
45153646 |
taacaccaaattcaaaacattataattgcatgattgatcttcttggtagag |
45153696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 24123618 - 24123486
Alignment:
| Q |
96 |
ttctttctgcttgttgtcatatatactggtttgctagacacaggagccgaatacttctatccaatgaatgaaaaatacagtgtaacaacaacttcaaaac |
195 |
Q |
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| T |
24123618 |
ttctttctgcttgtagttatatatattgctttgctagacacaggagccgaataattctatccaatgaatgaagaatacaatgtaacaccaacttcaaaac |
24123519 |
T |
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| Q |
196 |
gttatacttgcatgattgatcttcttggcagag |
228 |
Q |
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| T |
24123518 |
attatacttgcatgattgatcttcttggcagag |
24123486 |
T |
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