View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_6 (Length: 463)
Name: NF19069_high_6
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 44394656 - 44395083
Alignment:
| Q |
19 |
atatctagaatcaattttacatcttctagaaatgaagtcaaacatatacataagagaaagaaagtgnnnnnnnnnn-tgttaaggaacataatcacaagg |
117 |
Q |
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| T |
44394656 |
atatctagaatcaattttacatcttctagaaatgaagtcaaacatataca--agagaaagaaagtgaagaaaaaaaatgttaaggaacataatcacaagg |
44394753 |
T |
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| Q |
118 |
aaaatttggcccactgaataatgatgatgggattactattattctaaaatgattagtccattgattatatcatatgtaatgagtaaatacactgctttca |
217 |
Q |
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| T |
44394754 |
aaaatttggcccactgaataatgatgatgggattactattattctaaaatgattagtccattgattatatcatatgtaatgagtaaatacactgctttca |
44394853 |
T |
|
| Q |
218 |
tttttcaattcaaaaacctttcttggtttgtgagaatgcctttcttctttaccccacttattttttaaaaaggttcttggtcataactttgcacaataca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44394854 |
tttttcaattcaaaaacctttcttggtttgtgagaatgcctttcttctttaccccacttattttttaaaaaggttcttggtcataactttgcacaataca |
44394953 |
T |
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| Q |
318 |
atgttgctcatattttgatgcacaagggaatgaacttttcaaggtatcgtttttctacttgtaagctaactaatgtaattattcaatgtgagtctactaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44394954 |
atgttgctcatattttgatgcacaagggaatgaacttttcaaggtatcgtttttctacttgtaagctaactaatgtaattattcaatgtgagtctactaa |
44395053 |
T |
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| Q |
418 |
gaagaaaagcatgctgagatgtgggaactc |
447 |
Q |
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| T |
44395054 |
gaagaaaagcatgctgagatgtgggaactc |
44395083 |
T |
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