View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_12 (Length: 379)
Name: NF19069_low_12
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 193 - 363
Target Start/End: Complemental strand, 11826177 - 11826007
Alignment:
| Q |
193 |
attactaatttatctattttgtatagattggagcgagtaaatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgcta |
292 |
Q |
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| T |
11826177 |
attactaatttatctatttcgtgtaggcttgatcgagtaaatccagattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgcta |
11826078 |
T |
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| Q |
293 |
aggtgataaaggtttcaagtgcataattgttgttcacaagatgaaattgaagtttcatataccttcttggt |
363 |
Q |
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| T |
11826077 |
aggtgataaaggtttcaagtgcataattgttgttcacaagaggaaattgaagtttcatataccttcttggt |
11826007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 11826537 - 11826397
Alignment:
| Q |
2 |
cttcagtatatttcctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataatcaaagaaatgttacgccttgtgagtatgaactt |
101 |
Q |
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| T |
11826537 |
cttcagtatattttctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataatcaaagaaatgttacgccttgtgagtatgaactt |
11826438 |
T |
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| Q |
102 |
cgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
142 |
Q |
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| T |
11826437 |
cgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
11826397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 11799383 - 11799264
Alignment:
| Q |
205 |
tctattttgtatagattggagcgagtaaatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgctaaggtgataaagg |
304 |
Q |
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| T |
11799383 |
tctattttatgtaggttggagcgagtaaatccagaatgccctattacttgcttaccattatccaagcctatagacaattgcctttccaaggtgataaagg |
11799284 |
T |
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| Q |
305 |
tttcaagtgcataattgttg |
324 |
Q |
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| T |
11799283 |
tttcaagtgcatagttgttg |
11799264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 11815265 - 11815194
Alignment:
| Q |
232 |
aatccaaattgtcctattactagcttaccatcaccaaagcccaaagacaattgccttgctaaggtgataaag |
303 |
Q |
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| T |
11815265 |
aatccagaatgtcctatgacttgcttaccatcatcaaagcccatagacaattgccttgctagggtgataaag |
11815194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 11816361 - 11816278
Alignment:
| Q |
59 |
tacagataatcaaagaaatgttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
142 |
Q |
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| T |
11816361 |
tacagataatcaacgaagtgttacgccttgtcagcatcaacttcgcaatttttcgggaggcaactatagacgttaacatcaatg |
11816278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 11802288 - 11802199
Alignment:
| Q |
53 |
tttatatacagataatcaaagaaatgttacgccttgtgagtatgaacttcgcaagttttcgggaggcaaaaagagatgttaccatcaatg |
142 |
Q |
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| T |
11802288 |
tttatatacaggtaatcaacgaaatgttacgtgttgtcggtttgaatttcgcactttttcgggaggcaactaaagatgttaacatgaatg |
11802199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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