View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_low_14 (Length: 370)

Name: NF19069_low_14
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_low_14
NF19069_low_14
[»] chr1 (12 HSPs)
chr1 (144-317)||(9879209-9879377)
chr1 (2-76)||(9879445-9879519)
chr1 (8-65)||(37400292-37400349)
chr1 (320-355)||(9879146-9879181)
chr1 (1-60)||(50919977-50920036)
chr1 (3-65)||(2219990-2220052)
chr1 (12-73)||(40257409-40257470)
chr1 (8-60)||(9117142-9117194)
chr1 (1-73)||(17745250-17745322)
chr1 (1-73)||(21547474-21547546)
chr1 (8-60)||(24047103-24047155)
chr1 (8-60)||(31383799-31383851)
[»] chr5 (4 HSPs)
chr5 (8-73)||(30109309-30109374)
chr5 (1-40)||(29173533-29173572)
chr5 (3-40)||(8779306-8779343)
chr5 (1-65)||(16773825-16773889)
[»] chr7 (8 HSPs)
chr7 (5-73)||(48771948-48772016)
chr7 (1-73)||(33869439-33869511)
chr7 (8-59)||(7499925-7499976)
chr7 (3-73)||(45709704-45709774)
chr7 (14-58)||(18011356-18011400)
chr7 (8-60)||(26199532-26199584)
chr7 (1-73)||(26459404-26459476)
chr7 (1-73)||(30579345-30579417)
[»] scaffold0517 (1 HSPs)
scaffold0517 (8-65)||(7727-7784)
[»] chr6 (4 HSPs)
chr6 (8-73)||(32283786-32283851)
chr6 (3-73)||(32201881-32201951)
chr6 (3-65)||(33549122-33549184)
chr6 (8-73)||(24641191-24641256)
[»] scaffold0194 (1 HSPs)
scaffold0194 (3-73)||(13042-13112)
[»] chr8 (8 HSPs)
chr8 (8-74)||(35035296-35035362)
chr8 (3-72)||(968373-968442)
chr8 (8-73)||(28783070-28783135)
chr8 (3-73)||(3624590-3624660)
chr8 (3-73)||(8485009-8485079)
chr8 (8-73)||(16852350-16852415)
chr8 (8-73)||(19703488-19703553)
chr8 (1-41)||(16585482-16585522)
[»] chr2 (8 HSPs)
chr2 (8-73)||(7599982-7600047)
chr2 (8-73)||(37480085-37480150)
chr2 (2-48)||(33582008-33582054)
chr2 (1-74)||(11251096-11251169)
chr2 (8-65)||(21213787-21213844)
chr2 (8-73)||(39715002-39715067)
chr2 (1-73)||(3001389-3001461)
chr2 (8-72)||(12086130-12086194)
[»] chr3 (6 HSPs)
chr3 (2-73)||(2667872-2667943)
chr3 (3-65)||(21960569-21960631)
chr3 (1-59)||(27259185-27259243)
chr3 (1-58)||(10445133-10445190)
chr3 (8-73)||(19154641-19154706)
chr3 (1-65)||(29563918-29563982)
[»] scaffold0258 (1 HSPs)
scaffold0258 (3-65)||(15319-15381)
[»] chr4 (4 HSPs)
chr4 (11-69)||(17618295-17618353)
chr4 (1-73)||(27372651-27372723)
chr4 (1-73)||(37109345-37109417)
chr4 (29-73)||(46545721-46545765)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-70)||(11541-11610)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-60)||(49329-49386)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-73)||(41627-41699)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 144 - 317
Target Start/End: Complemental strand, 9879377 - 9879209
Alignment:
Q  144 agtagttaattacaagaatatagtgtaaacctattttttggaagtgaaaaactgtatgaataattactttcttaagaaatgtgcatatctcaaatgagac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  9879377 agtagttaattacaagaatatagtgtaaacctattttttggaattgaaaaactgtatgaataattactttctta-----tgtgcatatctcaaatgagac 9879283  T
Q  244 ggtcatatatagtacgagacgaatgaagaatttactatttgtttgatgaataaaatggaccagttatattctat 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9879282 ggtcatatatagtacgagacgaatgaaaaatttactatttgtttgatgaataaaatggaccagttatattctat 9879209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 9879519 - 9879445
Alignment:
Q  2 agagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaaccttc 76  Q
    ||||||||||||| |||| ||||||| || ||| ||||| |||| || ||||||||||| |||||||||||||||    
T  9879519 agagataatcgaatctgagacctcaaggaagagtacactctcagatcccaagccaatacaaccaagccaaccttc 9879445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 37400349 - 37400292
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||||    
T  37400349 aatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccacca 37400292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 9879181 - 9879146
Alignment:
Q  320 tacaaaagtctatacactctatctcatgtcgattat 355  Q
    ||||||||||||||||||||||||||||||||||||    
T  9879181 tacaaaagtctatacactctatctcatgtcgattat 9879146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50920036 - 50919977
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||||| ||||||||||||||||| || || ||||||||| |||||| ||||| ||||||    
T  50920036 cagagagaatcgaacctgaaaccttaaggatgagcacactctcaggtttcaagtcaatac 50919977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 2220052 - 2219990
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||| |||||||||||| ||||| | ||| |||||||||||||||  ||||||||||| ||||    
T  2220052 gagagaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccacca 2219990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 40257470 - 40257409
Alignment:
Q  12 gaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||| ||| ||||| | ||||||||||||  |||||||||||||||||| |||| |||||||    
T  40257470 gaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacc 40257409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 9117194 - 9117142
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||||||||||| ||||||| ||||||||||||| ||| || |||||| ||||    
T  9117194 aatcgaacctgagacctcaaggaggagcacacttccagatcccaagcccatac 9117142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17745250 - 17745322
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| |||||||| ||| ||||| | |||||||||||  ||||||| ||||||||||| || | |||||||    
T  17745250 cagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacc 17745322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21547474 - 21547546
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| |||||||||||||||||| | ||||||||| ||  || ||| ||||||||||| || | |||||||    
T  21547474 cagagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaataccactaggccaacc 21547546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24047103 - 24047155
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||||||| ||||||||| | ||||||||||||  || |||||||||||||||    
T  24047103 aatcgaacttgaaacctcgaggaggagcacactcccaagtctcaagccaatac 24047155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 31383799 - 31383851
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||||||||||| ||| ||| ||||||||||||  |||||| |||||||||||    
T  31383799 aatcgaacctgagaccccaaggaggagcacactcccaggtcccaagccaatac 31383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 30109309 - 30109374
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||||| ||||||||||||  |||||| ||||||||||| ||||||||||||    
T  30109309 aatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacc 30109374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29173572 - 29173533
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacact 40  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  29173572 cagagataatcgaacctgaaacctcgaggaggagcacact 29173533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 8779306 - 8779343
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacact 40  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  8779306 gagataatcgaacctgaaacctcgaggaggagcacact 8779343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16773889 - 16773825
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||||| |||||||||||| ||||| | ||||||||||||  |||||| |||| |||||| ||||    
T  16773889 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccacca 16773825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 48772016 - 48771948
Alignment:
Q  5 gataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    ||||||||||||||| ||||||| ||||||||||||  ||| || ||||||||||| ||||||||||||    
T  48772016 gataatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacc 48771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33869439 - 33869511
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| ||||||||| || ||||  |  |||||||||||| ||||||||||||||||||||| | |||||||    
T  33869439 cagagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggccaacc 33869511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 7499925 - 7499976
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaata 59  Q
    |||||||||||| ||||| |||||||||| ||| ||||||| ||||||||||    
T  7499925 aatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaata 7499976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 45709704 - 45709774
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    ||||||||||||||||| ||||| | |||||||||||| |||| || ||||| ||||| || | |||||||    
T  45709704 gagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacc 45709774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 18011356 - 18011400
Alignment:
Q  14 acctgaaacctcaaagaggagcacactttcaggtctcaagccaat 58  Q
    |||||| ||||||  |||||||||||| |||||||||||||||||    
T  18011356 acctgagacctcatggaggagcacactctcaggtctcaagccaat 18011400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26199584 - 26199532
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||||||||||| | |||||||||||| ||| | ||||||| |||||||||||    
T  26199584 aatcgaacctgagatctcaaagaggagtacattctcaggtcccaagccaatac 26199532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26459404 - 26459476
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| |||||||||||| ||||  | ||||||||||||  |||||| ||||||||||| || | |||||||    
T  26459404 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacc 26459476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30579417 - 30579345
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| |||||||||||| ||||  | |||| | |||||  |||||||||||||||||| |||| |||||||    
T  30579417 cagagaaaatcgaacctgagaccttgaggaggtggacactcccaggtctcaagccaataccaccaggccaacc 30579345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 7727 - 7784
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||||    
T  7727 aatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccacca 7784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 32283786 - 32283851
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||||||||| |||||||||| | |||||| |||||||||||||| | |||| |||||    
T  32283786 aatcgaacctgaaacctcgaagaggagcataatttcagatctcaagccaataccatcaagacaacc 32283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 32201881 - 32201951
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    ||||||||||||| |||||| | || |||||||||||| | || || ||||||||||| |||||| |||||    
T  32201881 gagataatcgaacttgaaacttaaaggaggagcacactctgagatcccaagccaataccaccaagtcaacc 32201951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 33549184 - 33549122
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||| |||||||||||| ||||| | ||||||||||||  |||||| ||||||||||| ||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccacca 33549122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 24641191 - 24641256
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||| ||||||| | ||||||||||||  ||| || |||| |||||| ||||||||||||    
T  24641191 aatcgaaccttaaacctcgaggaggagcacactcccagatcccaagtcaataccaccaagccaacc 24641256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 13042 - 13112
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||| |||||||||||| ||||  | ||||||||||||  ||| |||||||||||||| ||||||||||||    
T  13042 gagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaataccaccaagccaacc 13112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 35035362 - 35035296
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacct 74  Q
    |||| ||| ||| |||||||||||||||||||||| || |||||||||||||| | || ||||||||    
T  35035362 aatctaacatgagacctcaaagaggagcacacttttagatctcaagccaataccaacaggccaacct 35035296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 968442 - 968373
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaac 72  Q
    |||| |||||||||||| ||||| | ||||||||||||  |||||| ||||||||||| |||| ||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaac 968373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 28783135 - 28783070
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||| ||| ||||  | ||||||||||||  |||||||||||||||||| ||||||||||||    
T  28783135 aatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacc 28783070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 3624660 - 3624590
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||| |||||||||||| ||||  ||||||||||||||  |||||| ||||||||||| || | |||||||    
T  3624660 gagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacc 3624590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 8485079 - 8485009
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||| |||||||  ||| ||||||||||||||||||||  |||||| ||||| ||||| |||| |||||||    
T  8485079 gagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacc 8485009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 16852415 - 16852350
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||| | ||||||||||||  |||||| ||||||||||| || | |||||||    
T  16852415 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacc 16852350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 19703488 - 19703553
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||  | |||||||||||| ||||||| ||||||||||| || | |||||||    
T  19703488 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacc 19703553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16585482 - 16585522
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactt 41  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  16585482 cagagataatcgaagctgaaaccacgaagaggagcacactt 16585522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 7599982 - 7600047
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||| ||||||||| | |||||||||||| | | ||||||||||||| | ||||||||||||    
T  7599982 aatcgaacatgaaacctcgaggaggagcacactcttaagtctcaagccaatgccaccaagccaacc 7600047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 37480150 - 37480085
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||  | |||||||||||| ||||||| ||||||||||| |||| |||||||    
T  37480150 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacc 37480085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 33582054 - 33582008
Alignment:
Q  2 agagataatcgaacctgaaacctcaaagaggagcacactttcaggtc 48  Q
    ||||| |||||||||||| ||||||| |||||||||||| |||||||    
T  33582054 agagagaatcgaacctgagacctcaaggaggagcacactctcaggtc 33582008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11251169 - 11251096
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacct 74  Q
    |||||| |||| ||||||| ||||  | ||||||||||||| || ||| ||||||||||| || ||||||||||    
T  11251169 cagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccactaagccaacct 11251096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 21213844 - 21213787
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||||||||||| ||||||| ||||| ||||||  |||||| ||||||||||| ||||    
T  21213844 aatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccacca 21213787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 39715067 - 39715002
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||| | ||||||||||||  |||||| |||| |||||| |||| |||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacc 39715002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3001461 - 3001389
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    ||||||||||||||||||| | ||||| ||||||||||||   || ||||||| |||||| || | |||||||    
T  3001461 cagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacc 3001389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 12086130 - 12086194
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaac 72  Q
    ||||||||| || ||||  | ||||||||||||| |||||| ||||||||||| |||| ||||||    
T  12086130 aatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaac 12086194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2667943 - 2667872
Alignment:
Q  2 agagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||||||||| ||||| | || |||||||||  ||| || ||||||||||| |||| |||||||    
T  2667943 agagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggccaacc 2667872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 21960631 - 21960569
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||| ||||||| |||| ||||| | |||||||||||| ||||||| ||||||||||| ||||    
T  21960631 gagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaataccacca 21960569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27259243 - 27259185
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaata 59  Q
    |||||| |||| ||||||||||||| | ||||||||||||  |||||| ||||||||||    
T  27259243 cagagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaata 27259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10445133 - 10445190
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaat 58  Q
    |||||| |||||||||||| ||||| | ||||||||||||  |||||| |||||||||    
T  10445133 cagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 19154706 - 19154641
Alignment:
Q  8 aatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||  | |||||||||||| ||||| ||||||||||||| || | |||||||    
T  19154706 aatcgaacctgagacctttaggaggagcacactctcaggcctcaagccaatacaactaggccaacc 19154641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29563982 - 29563918
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||||| |||||||||||| || || | ||| ||||||||| ||| |||||||||||||| ||||    
T  29563982 cagagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaataccacca 29563918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 15319 - 15381
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactacca 65  Q
    |||| |||||||||||| ||||| | ||||||||||||  |||||| ||||||||||| ||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccacca 15381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 17618353 - 17618295
Alignment:
Q  11 cgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagcc 69  Q
    ||||| ||| ||||| | ||||||||||||  |||||||||||||||||| ||||||||    
T  17618353 cgaacatgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaagcc 17618295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27372651 - 27372723
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    ||||||||||||||||| | |||| ||||||||||||| |  || || |||| |||||||||| | |||||||    
T  27372651 cagagataatcgaacctaagaccttaaagaggagcacattcccaagtttcaaaccaatactactaggccaacc 27372723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37109345 - 37109417
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| |||||||||||| ||||  | ||||||||||||  |||||| ||||||||||| || | |||||||    
T  37109345 cagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacc 37109417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 46545765 - 46545721
Alignment:
Q  29 gaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||||||||| ||||||||||||||||||| || | |||||||    
T  46545765 gaggagcacactctcaggtctcaagccaataccactaggccaacc 46545721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11610 - 11541
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagcca 70  Q
    |||||| |||||||||||| ||||| | ||||||||||||  ||| || ||||||||||| |||| ||||    
T  11610 cagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggcca 11541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 49386 - 49329
Alignment:
Q  3 gagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatac 60  Q
    |||| |||||||||||| ||||| |||||||||||||| |||  || |||||||||||    
T  49386 gagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaatac 49329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41627 - 41699
Alignment:
Q  1 cagagataatcgaacctgaaacctcaaagaggagcacactttcaggtctcaagccaatactaccaagccaacc 73  Q
    |||||| ||| |||||||| ||||| | |||||||| ||| |||| |||||||||||||| || | |||||||    
T  41627 cagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacc 41699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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