View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_18 (Length: 333)
Name: NF19069_low_18
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 38511304 - 38511607
Alignment:
| Q |
17 |
aaaattgttgttaaatcaatagctgctagatagttagcagcattgagaagaagaagaatcatgacagataaaatacatgcaaaattccaaagaaatttgt |
116 |
Q |
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| T |
38511304 |
aaaattgttgttaaatcaatagctgctagatagttagcagcattgagaagaagtagaa-catgacagataaaatacatgcaaaattccaaagaaatttgt |
38511402 |
T |
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| Q |
117 |
ataccttgtgaactttgctatttgtgttcctttggctgttaaactgattcacttccttcaaggttgtgcaatgagtgaagggtataacaaatgcataaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38511403 |
ataccttgtgaactttgctatttgtgttcctttggctgttaaactgattcacttccttcaaggttgtgcattgagtgaagggtataacaaatgcataaaa |
38511502 |
T |
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| Q |
217 |
tgaaacaataacaaagcacactgacttgtaagaaatgtgcattctcctagcacaataactcagcaacacaaaactacaaggtactgattactatttacta |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38511503 |
tgaaacaataacaaagcacgctgacttgtaagaaatgtgcattctcctagcacaataactcagcaacacaaaactacaaggtactgattactatttacta |
38511602 |
T |
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| Q |
317 |
ccctt |
321 |
Q |
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||||| |
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| T |
38511603 |
ccctt |
38511607 |
T |
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