View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_19 (Length: 330)
Name: NF19069_low_19
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 292
Target Start/End: Original strand, 31575372 - 31575568
Alignment:
| Q |
96 |
ttgatgtattaatttttaaattagatatgtcaactttgttgaccttaatgtctcttataaataggattactggacatctcttataaataggatcacatat |
195 |
Q |
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| T |
31575372 |
ttgatgtattgatttttgaattagatacgtcaattttgttgaccttgatatctcttataaataggattaccggacgtttcttataaataagatcacatgg |
31575471 |
T |
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| Q |
196 |
atggagtagtatataaaaattccttatacatgttaaatggacctcaaactatggcaggtcctacatagtgcatatatggcaagatgtggcaagatgt |
292 |
Q |
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| T |
31575472 |
agggagtagtatataaaaattccttatacatgttaagtggacctcaaactatggcaggacctacatagtgcatatatggcaagatgtggcaagatgt |
31575568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 31575247 - 31575308
Alignment:
| Q |
15 |
gatagaagtaggttataaatttataataataagttacttcttggctaatatacttacaatat |
76 |
Q |
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| T |
31575247 |
gatagaagtaggttataaatttataataatcagttactttttggctaatatacttacaatat |
31575308 |
T |
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