View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_low_21 (Length: 320)

Name: NF19069_low_21
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_low_21
NF19069_low_21
[»] chr4 (4 HSPs)
chr4 (33-320)||(54260241-54260528)
chr4 (150-196)||(26261273-26261319)
chr4 (33-71)||(26261550-26261588)
chr4 (96-137)||(26261383-26261424)
[»] chr6 (3 HSPs)
chr6 (34-320)||(21112204-21112490)
chr6 (33-314)||(8862152-8862433)
chr6 (214-320)||(11382631-11382737)
[»] chr8 (15 HSPs)
chr8 (33-320)||(17630837-17631124)
chr8 (33-320)||(21076086-21076373)
chr8 (33-320)||(20289456-20289743)
chr8 (33-320)||(29054678-29054966)
chr8 (33-271)||(17068340-17068578)
chr8 (33-271)||(17579695-17579933)
chr8 (33-320)||(34964423-34964699)
chr8 (123-320)||(10861549-10861746)
chr8 (33-108)||(10861482-10861557)
chr8 (99-243)||(3046537-3046681)
chr8 (34-94)||(3046447-3046507)
chr8 (278-320)||(17068312-17068354)
chr8 (278-320)||(17579919-17579961)
chr8 (41-91)||(44718251-44718301)
chr8 (255-316)||(3046756-3046817)
[»] chr5 (10 HSPs)
chr5 (33-320)||(8871360-8871647)
chr5 (33-320)||(13854368-13854655)
chr5 (131-320)||(36606291-36606480)
chr5 (99-251)||(6665857-6666009)
chr5 (96-251)||(32659069-32659224)
chr5 (39-95)||(6666038-6666094)
chr5 (33-100)||(36606474-36606541)
chr5 (33-79)||(32659267-32659313)
chr5 (278-316)||(6665757-6665795)
chr5 (96-137)||(30131211-30131252)
[»] chr3 (17 HSPs)
chr3 (34-320)||(958951-959237)
chr3 (33-320)||(39580009-39580296)
chr3 (33-320)||(25041454-25041742)
chr3 (33-320)||(4533586-4533873)
chr3 (33-320)||(42864386-42864669)
chr3 (81-317)||(39674298-39674532)
chr3 (90-320)||(53330421-53330653)
chr3 (90-320)||(53334105-53334337)
chr3 (90-320)||(53337782-53338014)
chr3 (34-142)||(21869148-21869256)
chr3 (96-251)||(22976519-22976673)
chr3 (34-95)||(22976432-22976493)
chr3 (44-95)||(29360074-29360125)
chr3 (33-77)||(41530363-41530407)
chr3 (255-313)||(29359788-29359846)
chr3 (155-241)||(29359927-29360011)
chr3 (96-129)||(29360014-29360047)
[»] scaffold0017 (1 HSPs)
scaffold0017 (33-320)||(37725-38012)
[»] chr2 (5 HSPs)
chr2 (33-320)||(14811392-14811679)
chr2 (33-320)||(14314062-14314355)
chr2 (96-140)||(13043622-13043666)
chr2 (150-246)||(29081106-29081202)
chr2 (34-94)||(13043503-13043563)
[»] chr7 (20 HSPs)
chr7 (33-320)||(19927928-19928213)
chr7 (33-320)||(30947672-30947962)
chr7 (33-320)||(25443715-25444001)
chr7 (33-195)||(26279619-26279781)
chr7 (33-196)||(40819605-40819768)
chr7 (225-320)||(40819769-40819864)
chr7 (163-254)||(37243003-37243094)
chr7 (250-320)||(37245166-37245236)
chr7 (96-200)||(22293075-22293179)
chr7 (96-200)||(45280984-45281088)
chr7 (40-95)||(22205004-22205059)
chr7 (40-95)||(22229680-22229735)
chr7 (40-94)||(22293205-22293259)
chr7 (129-200)||(22205102-22205173)
chr7 (129-200)||(22229566-22229637)
chr7 (41-94)||(26244664-26244717)
chr7 (40-78)||(45281169-45281207)
chr7 (61-94)||(45281116-45281149)
chr7 (98-138)||(36630746-36630786)
chr7 (261-316)||(45280797-45280852)
[»] chr1 (5 HSPs)
chr1 (36-320)||(46397774-46398054)
chr1 (96-198)||(33369015-33369114)
chr1 (34-88)||(33369145-33369199)
chr1 (282-320)||(33368831-33368869)
chr1 (46-90)||(22150348-22150392)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 54260528 - 54260241
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54260528 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 54260429  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||    
T  54260428 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaacctatttttttaggttagaagagacaatatgatttt 54260329  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  54260328 gatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 54260241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 26261319 - 26261273
Alignment:
Q  150 taatggttagaagagagaatagctattgctatgtggtgacgagaaac 196  Q
    ||||||||||||||| |||||||||| |||  |||||||||||||||    
T  26261319 taatggttagaagagggaatagctatagctcggtggtgacgagaaac 26261273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 26261588 - 26261550
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaaca 71  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  26261588 gaacatcattgtctaatgttgactacttaataattaaca 26261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 26261424 - 26261383
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaa 137  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  26261424 cagaagaaacatagcattagagagaagagaaagagagcagaa 26261383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 34 - 320
Target Start/End: Complemental strand, 21112490 - 21112204
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21112490 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 21112391  T
Q  134 agaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttg 233  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  21112390 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttg 21112291  T
Q  234 atagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||| |||||||||||||||  ||||||||||||  | |||||||||||||||||||||||||||||||||||| ||||||    
T  21112290 atagcgctgccagacttgataggtgtcagagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatt 21112204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 33 - 314
Target Start/End: Complemental strand, 8862433 - 8862152
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  8862433 gaacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaacagtagaagaaacataacattatagagaagagaaacagag 8862334  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  8862333 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 8862234  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcg 314  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  8862233 gatagcgctgctagacttgataggtgtcggagtataagtaagctgtgtcggagtataagttagtcgtatccgacacgtatcg 8862152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 11382737 - 11382631
Alignment:
Q  214 gaagagacaatatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatc 313  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11382737 gaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacgtatc 11382638  T
Q  314 ggtcatt 320  Q
    | |||||    
T  11382637 gctcatt 11382631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 17630837 - 17631124
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  17630837 gaacatatttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaacagcagaataaacataacattagagagaagagaaacagag 17630936  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||    
T  17630937 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 17631036  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  17631037 gatagcgttgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 17631124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 21076373 - 21076086
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||| | |||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21076373 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 21076274  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||    
T  21076273 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaaaagacaatatgatttt 21076174  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  21076173 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 21076086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 20289743 - 20289456
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||| | |||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  20289743 gaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaacataagaaacataacattagagagaagagaaacagag 20289644  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||    
T  20289643 tagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaaaagacaatatgatttt 20289544  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  20289543 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 20289456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 29054966 - 29054678
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29054966 gaacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 29054867  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagcta--ttgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatt 230  Q
    ||||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  29054866 tagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtggtgacgagaaacccta-ttttttaggttagaagagacaatatgatt 29054768  T
Q  231 ttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||| |||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  29054767 ttgataacgctgccaaacttgataggtgttggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtataggtcatt 29054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 271
Target Start/End: Complemental strand, 17068578 - 17068340
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17068578 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17068479  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  17068478 taaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagataatatgatttt 17068379  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagt 271  Q
    ||||||||||| ||||||||||||||| |||||| ||||    
T  17068378 gatagcgctgcgagacttgataggtgtcggagtacaagt 17068340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 17579695 - 17579933
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17579695 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 17579794  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  17579795 taaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagataatatgatttt 17579894  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagt 271  Q
    ||||||||||| ||||||||||||||| |||||| ||||    
T  17579895 gatagcgctgcgagacttgataggtgtcggagtacaagt 17579933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 34964423 - 34964699
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  34964423 gaacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaacagcagaataaacataacattagagagaagagaaacatag 34964522  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||           ||    
T  34964523 tagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttttaggttagaagag-----------tt 34964611  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| | ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||    
T  34964612 gatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacatatcggtcatt 34964699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 10861549 - 10861746
Alignment:
Q  123 agaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagaca 222  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |    
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatatttttaggttagaagagaga 10861648  T
Q  223 atatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||| |||||||| |||| |||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  10861649 atatgattttgagagcgctgccagacctgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 10861746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 10861482 - 10861557
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10861482 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacata 10861557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 3046537 - 3046681
Alignment:
Q  99 aagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 198  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||   || ||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  3046537 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaaccc 3046636  T
Q  199 tannnnnnnaggttagaagagacaatatgattttgatagcgctgc 243  Q
    ||        ||||||||||||||||||| |||||||||||||||    
T  3046637 tatttttttgggttagaagagacaatatgtttttgatagcgctgc 3046681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 3046447 - 3046507
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 94  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  3046447 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaaca 3046507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 17068354 - 17068312
Alignment:
Q  278 tgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17068354 tgtcggagtacaagttagtcgcatccgacacgtatcggtcatt 17068312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 17579919 - 17579961
Alignment:
Q  278 tgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17579919 tgtcggagtacaagttagtcgcatccgacacgtatcggtcatt 17579961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 44718251 - 44718301
Alignment:
Q  41 ttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaa 91  Q
    |||||||||||||||||||||||||||||||||| || | || ||||||||    
T  44718251 ttgtctaatgttgactacttaatagttaacactatttgaaattgaaaacaa 44718301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 3046756 - 3046817
Alignment:
Q  255 ggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggt 316  Q
    ||||| ||||||||| | | || ||||||||||||||||||  ||||| |||||||||||||    
T  3046756 ggtgtcggagtataaattagctgtgtcggagtacaagttagctgtatcagacacgtatcggt 3046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 8871647 - 8871360
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8871647 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 8871548  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  8871547 tagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 8871448  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||||||||||    
T  8871447 gatagcgctgccagacttgataggtgtcggagtataactaagatgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 8871360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 13854368 - 13854655
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  13854368 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaa-caaatagcagaagaaacataacattagagagaagagaaacagag 13854466  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-nnnnnnnaggttagaagagacaatatgattt 231  Q
    ||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||||||        ||||||| ||||||||||||||||    
T  13854467 tagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtgacgagaaaccctattttttttaggttaggagagacaatatgattt 13854566  T
Q  232 tgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||| ||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||| ||||||    
T  13854567 tgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatt 13854655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 131 - 320
Target Start/End: Complemental strand, 36606480 - 36606291
Alignment:
Q  131 agtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatt 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatt 36606381  T
Q  231 ttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||||| |||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  36606380 ttgatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtgtcggtcatt 36606291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 6666009 - 6665857
Alignment:
Q  99 aagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 198  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||   || ||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  6666009 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 6665910  T
Q  199 tannnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttg 251  Q
    ||        ||||||||||||||||||| ||||||||||||||| |||||||    
T  6665909 tatttttttgggttagaagagacaatatgtttttgatagcgctgccagacttg 6665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 32659224 - 32659069
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||||||||||||||||||||| || |||||||  |||||||||||||||    |||||| |||||||  |||||||||| |||||||||||||||||||    
T  32659224 cagaagaaacataacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaa 32659125  T
Q  196 ccctannnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttg 251  Q
    |||||        ||||||||||||||||||| ||||||||||| ||| |||||||    
T  32659124 ccctatattttggggttagaagagacaatatgtttttgatagcgttgccagacttg 32659069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 6666094 - 6666038
Alignment:
Q  39 ctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6666094 ctttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacag 6666038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 36606541 - 36606474
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaa 100  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||| ||||    
T  36606541 gaacatctttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaacagtagaa 36606474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 32659313 - 32659267
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaattta 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  32659313 gaacacctttgtctaatgttgactacttaatagttaacactaattta 32659267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 6665795 - 6665757
Alignment:
Q  278 tgtcggagtacaagttagtcgtatccgacacgtatcggt 316  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  6665795 tgtcggagtataagttagccgtatccgacacgtatcggt 6665757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 30131211 - 30131252
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaa 137  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  30131211 cagaagaaacatagcattagagagaagagaaataaagtagaa 30131252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 34 - 320
Target Start/End: Complemental strand, 959237 - 958951
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 959138  T
Q  134 agaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttg 233  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  959137 agaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttg 959038  T
Q  234 atagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||| |||||||||||||||  |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  959037 atagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatt 958951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 39580296 - 39580009
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39580296 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacaaag 39580197  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||    
T  39580196 tagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacattatgatttt 39580097  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  39580096 gatagcgctgccagagttgataggtgtcggagtataagtaagctgtgccggagtacaagttagtcgtatccgacacgtatcggtcatt 39580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 25041742 - 25041454
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25041742 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 25041643  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-nnnnnnnaggttagaagagacaatatgattt 231  Q
    ||||||| ||||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  25041642 tagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccctattttttttaggttagaagagacaatatgattt 25041543  T
Q  232 tgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||| || ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  25041542 tgatagcgcagccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcagtcatt 25041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 4533873 - 4533586
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4533873 gaacatctttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaacagcaaaagaaacataacattagagagaagagaaacagag 4533774  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||| | || |||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||| |||||||||||    
T  4533773 tagaattcaataagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaaccctattattttaggttagaagagataatatgatttt 4533674  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| | ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||    
T  4533673 gatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatctgacgcgtatcggtcatt 4533586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 42864669 - 42864386
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||| ||||||||||| |     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42864669 gaacatctttgtctaatggtgactacttaacat----cagtaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacatag 42864574  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  42864573 tagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgatttt 42864474  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  42864473 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacatgtatcggtcatt 42864386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 81 - 317
Target Start/End: Complemental strand, 39674532 - 39674298
Alignment:
Q  81 atcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgcta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||  ||||||||||||||||||||||||    
T  39674532 atcgaaaacaaacagcagaagaaacataacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgcta 39674435  T
Q  181 tgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgt 280  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||  | |||    
T  39674434 tgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagttgtgt 39674335  T
Q  281 cggagtacaagttagtcgtatccgacacgtatcggtc 317  Q
    |||||||||||||||||||||||||||||||||||||    
T  39674334 cggagtacaagttagtcgtatccgacacgtatcggtc 39674298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 53330421 - 53330653
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53330421 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53330520  T
Q  190 gagaaacccta--nnnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagta 287  Q
    |||||||||||           |||||||||||||||||||||||| ||||||| | |||||||||||||||  |||||||||||| || ||||||||||    
T  53330521 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53330620  T
Q  288 caagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||||||||||||||||||| ||||    
T  53330621 caagttagtcgtatccgacacgtatcggacatt 53330653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 53334105 - 53334337
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53334105 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53334204  T
Q  190 gagaaacccta--nnnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagta 287  Q
    |||||||||||           |||||||||||||||||||||||| ||||||| | |||||||||||||||  |||||||||||| || ||||||||||    
T  53334205 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53334304  T
Q  288 caagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||||||||||||||||||| ||||    
T  53334305 caagttagtcgtatccgacacgtatcggacatt 53334337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 53337782 - 53338014
Alignment:
Q  90 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgac 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53337782 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53337881  T
Q  190 gagaaacccta--nnnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagta 287  Q
    |||||||||||           |||||||||||||||||||||||| ||||||| | |||||||||||||||  |||||||||||| || ||||||||||    
T  53337882 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53337981  T
Q  288 caagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||||||||||||||||||| ||||    
T  53337982 caagttagtcgtatccgacacgtatcggacatt 53338014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 21869256 - 21869148
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 133  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21869256 aacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaacagcagaagaaacataacattagagagaagagaaacatagt 21869157  T
Q  134 agaattcaa 142  Q
    |||||||||    
T  21869156 agaattcaa 21869148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 22976519 - 22976673
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||  |||||||||||| ||||||| ||||||||||||||  || |||||||||||||||  ||||||||| |||||||||||||||||||    
T  22976519 cagaagaaacatggcattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaa 22976618  T
Q  196 ccctannnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttg 251  Q
    |||||        ||||| ||||||||||||| |||||||||||||||||||||||    
T  22976619 ccctattttttg-ggttaaaagagacaatatgtttttgatagcgctgctagacttg 22976673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 22976432 - 22976493
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22976432 aacacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacag 22976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 29360125 - 29360074
Alignment:
Q  44 tctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  29360125 tctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacag 29360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 41530363 - 41530407
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatt 77  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||    
T  41530363 gaacatcattgtctaatgttgactactttatagttaacactaatt 41530407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 29359846 - 29359788
Alignment:
Q  255 ggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatc 313  Q
    ||||| ||||||||||| |||  |||||||||||||||||| |||||||||||| ||||    
T  29359846 ggtgtcggagtataagttacccgtgtcggagtacaagttagccgtatccgacacatatc 29359788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 29360011 - 29359927
Alignment:
Q  155 gttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttgatagcgct 241  Q
    |||||||||| |||||||||| ||||| |||||||||||||| |||        ||||||||||||||||||| |||||||||||||    
T  29360011 gttagaagag-gaatagctatcgctatatggtgacgagaaacactattttttg-ggttagaagagacaatatgtttttgatagcgct 29359927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 29360047 - 29360014
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaaca 129  Q
    ||||||||||||||||||||||||||||||||||    
T  29360047 cagaagaaacataacattagagagaagagaaaca 29360014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 37725 - 38012
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37725 gaacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 37824  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    |||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||    
T  37825 tagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtgacgagaaaccctatttttttaggttaaaagagacaatatgatttt 37924  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| |||||||||| |||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  37925 gatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacgtatcggtcatt 38012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 14811679 - 14811392
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  14811679 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacaatagaagaaacataacattagagagaagagaaatagag 14811580  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||    
T  14811579 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaatcctatttttttaggttagaagagacaatatgatttt 14811480  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
     |||| ||||| |||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  14811479 aatagtgctgccagacttaataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 14811392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 14314062 - 14314355
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  14314062 gaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacagca-aagaaacataacattagagagaagagaaacaaag 14314160  T
Q  133 tagaattcaatcactgataatggttagaagagagaata-------gctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaata 225  Q
    |||||||||||||| | |||||||||||||||||||||       ||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  14314161 tagaattcaatcaccggtaatggttagaagagagaataactattggctattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaata 14314260  T
Q  226 tgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||    
T  14314261 tgattttgatagcgcagccagacttgataggtgttggagtataagtaagctgtgtcggagtgcaagttagtcgtatccgacacgtatcggtcatt 14314355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 13043622 - 13043666
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattc 140  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  13043622 cagaagaaacataacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 29081202 - 29081106
Alignment:
Q  150 taatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttgatagcgctgctag 246  Q
    ||||||||||||||| ||||| ||||||||  ||||||||||| |||||||        | ||||||||||||||||| |||| |||||||||||||    
T  29081202 taatggttagaagagggaataactattgctcggtggtgacgaggaaccctattttctgggattagaagagacaatatgtttttcatagcgctgctag 29081106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 13043503 - 13043563
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 94  Q
    |||||| ||||||||||||||| |||||||| |||||||||||| | || |||||||||||    
T  13043503 aacatcattgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaaca 13043563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 19927928 - 19928213
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927928 gaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 19928027  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||  |||||||||    
T  19928028 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccatatttttttaggttagaagagac--tatgatttt 19928125  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| |||||||||| ||||    |||||||||| || |||||||||||||||||||||||| | ||||||||||||||||    
T  19928126 gatagcgctgccagacttgataagtgtcaaggtataagtaagctgtgtcggagtacaagttagtcgtattcaacacgtatcggtcatt 19928213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 30947962 - 30947672
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||    
T  30947962 gaacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaacggcagaagaaacataacatc-gagagaagagaaacatag 30947864  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||    
T  30947863 tagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttttagattagaagagacaatatgatttt 30947764  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagt----tagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||    ||||||||||||||||||||| ||||||    
T  30947763 gatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtacaagttagttagtcgtatccgacacgtatcagtcatt 30947672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 25444001 - 25443715
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25444001 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaatagcagaagaaacataacattagagagaagagaaacagag 25443902  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgatttt 232  Q
    ||||||||||||  || |||||||||||| ||||||||||||||| |||||||||| ||||||||||        ||||||||||| |||||||||||||    
T  25443901 tagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaacccttattttttaggttagaagaaacaatatgatttt 25443802  T
Q  233 gatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||| ||||||||||||||| ||| |||||||||  | ||| ||||||||||||| | |||||||||||||||||||||||    
T  25443801 gatagcgctgccagacttgataggtgtcggaatataagtaagatgtgt-ggagtacaagttaattgtatccgacacgtatcggtcatt 25443715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 26279619 - 26279781
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26279619 gaacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 26279718  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  26279719 tagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 40819605 - 40819768
Alignment:
Q  33 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 132  Q
    |||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40819605 gaacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 40819704  T
Q  133 tagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaac 196  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||    
T  40819705 tagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 40819769 - 40819864
Alignment:
Q  225 atgattttgatagcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  40819769 atgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacgtatcggtcatt 40819864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 37243003 - 37243094
Alignment:
Q  163 agagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttgatagcgctgctagacttgata 254  Q
    ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37243003 agagaatagttattgctatgtggtgacgagaaaccctatttttttaggttagaagagacaatatgattttgatagcgctgccagacttgata 37243094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 37245166 - 37245236
Alignment:
Q  250 tgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  37245166 tgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 37245236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 22293179 - 22293075
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||| ||||||||  ||||||||||||||||||| |||||||||  |||  || ||||||||||||||| ||||| |||| | ||| |||||||||||||    
T  22293179 cagaggaaacatagtattagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatggtgacgagaaa 22293080  T
Q  196 cccta 200  Q
    |||||    
T  22293079 cccta 22293075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 45281088 - 45280984
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    |||||||||||| |||||||||  |||||||||| |||||||| ||||   ||||| |||||||||||| ||||| |||| ||| |||||||| ||||||    
T  45281088 cagaagaaacatgacattagagcaaagagaaacatagtagaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaa 45280989  T
Q  196 cccta 200  Q
    |||||    
T  45280988 cccta 45280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 22205004 - 22205059
Alignment:
Q  40 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  22205004 tttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22205059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 22229735 - 22229680
Alignment:
Q  40 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  22229735 tttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 22293259 - 22293205
Alignment:
Q  40 tttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  22293259 tttgtctaatgttgactacttaatagttaacactaatttagatcaaaaacaaaca 22293205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 22205102 - 22205173
Alignment:
Q  129 agagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 200  Q
    ||||||||||||||||   | ||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22205102 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22205173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 22229637 - 22229566
Alignment:
Q  129 agagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 200  Q
    ||||||||||||||||   | ||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22229637 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22229566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 26244664 - 26244717
Alignment:
Q  41 ttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 94  Q
    |||||||||||||||||||||||| |||||||||||| | || |||||||||||    
T  26244664 ttgtctaatgttgactacttaataattaacactaattgagattgaaaacaaaca 26244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 45281207 - 45281169
Alignment:
Q  40 tttgtctaatgttgactacttaatagttaacactaattt 78  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45281207 tttgtctaatgttgactgcttaatagttaacactaattt 45281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 45281149 - 45281116
Alignment:
Q  61 aatagttaacactaatttatatcgaaaacaaaca 94  Q
    ||||||||||||||||||||||||||||||||||    
T  45281149 aatagttaacactaatttatatcgaaaacaaaca 45281116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 36630786 - 36630746
Alignment:
Q  98 gaagaaacataacattagagagaagagaaacagagtagaat 138  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  36630786 gaagaaacataacattagaaagaagagaaacatagtagaat 36630746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 45280852 - 45280797
Alignment:
Q  261 ggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggt 316  Q
    ||||||||||| | |  |||| |||||||||||||||||||| |||||||||||||    
T  45280852 ggagtataagttagccgtgtcagagtacaagttagtcgtatctgacacgtatcggt 45280797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 46397774 - 46398054
Alignment:
Q  36 catctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtag 135  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||    
T  46397774 catctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaacaacagaagaaacataacattagagagaagagaaac--agtag 46397871  T
Q  136 aattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnaggttagaagagacaatatgattttgat 235  Q
    |||||||||  || ||||| || |||||||||||| || ||| ||||||||||||||||||||||       ||||||||| ||||  ||||||||||||    
T  46397872 aattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgagaaaccctatttttttaggttagaaaagac--tatgattttgat 46397969  T
Q  236 agcgctgctagacttgataggtgttggagtataagtaacctatgtcggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||  ||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  46397970 agcgctgtcagacttgataggtgtcggagtataagtaagctgtgtgggagtacaagttagtcgtatccgacacgtatcggtcatt 46398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 33369114 - 33369015
Alignment:
Q  96 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcactgataatggttagaagagagaatagctattgctatgtggtgacgagaaa 195  Q
    ||||||||||||| |||||||||||   |||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||    
T  33369114 cagaagaaacatagcattagagaga---gaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaa 33369018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 33369199 - 33369145
Alignment:
Q  34 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaa 88  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| || |||||    
T  33369199 aacacctttgtctaatgttgactacttaatagttaacactattttagattgaaaa 33369145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 33368869 - 33368831
Alignment:
Q  282 ggagtacaagttagtcgtatccgacacgtatcggtcatt 320  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  33368869 ggagtacaagttagccgtatctgacacgtatcggtcatt 33368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 22150348 - 22150392
Alignment:
Q  46 taatgttgactacttaatagttaacactaatttatatcgaaaaca 90  Q
    ||||||||||||||||||| |||||||||||| | || |||||||    
T  22150348 taatgttgactacttaataattaacactaattgagattgaaaaca 22150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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