View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_low_23 (Length: 307)

Name: NF19069_low_23
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_low_23
NF19069_low_23
[»] chr1 (19 HSPs)
chr1 (1-300)||(3379301-3379600)
chr1 (171-300)||(3362460-3362589)
chr1 (139-300)||(3373416-3373577)
chr1 (172-297)||(4334187-4334312)
chr1 (172-249)||(4322347-4322424)
chr1 (181-285)||(2007223-2007327)
chr1 (177-300)||(3217769-3217892)
chr1 (172-237)||(3341995-3342060)
chr1 (181-285)||(2012706-2012810)
chr1 (174-298)||(6601008-6601132)
chr1 (179-291)||(1793451-1793563)
chr1 (181-285)||(2011209-2011313)
chr1 (185-285)||(2020466-2020566)
chr1 (177-248)||(3193366-3193437)
chr1 (177-248)||(3202184-3202255)
chr1 (177-248)||(3211021-3211092)
chr1 (3-82)||(3373252-3373334)
chr1 (168-277)||(2947732-2947841)
chr1 (177-269)||(6591754-6591846)
[»] chr2 (4 HSPs)
chr2 (177-300)||(20953718-20953841)
chr2 (171-300)||(20935174-20935303)
chr2 (171-300)||(20924173-20924302)
chr2 (177-300)||(39274720-39274849)
[»] chr4 (1 HSPs)
chr4 (171-300)||(21238223-21238352)
[»] chr5 (1 HSPs)
chr5 (171-247)||(17970509-17970585)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 3379301 - 3379600
Alignment:
Q  1 taattattttttaaaggtataatgcacatacatctgaatgcggaacttaactgtaggagtgactaacctaattcttgtttaatccctactcccggcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379301 taattattttttaaaggtataatgcacatacatctgaatgcggaacttaactgtaggagtgactaacctaattcttgtttaatccctactcccggcccct 3379400  T
Q  101 atagatataatatgaatctcttgatttgtaaagtatcaaaaacaatatatactcaattagtgacgccctcctgttttgcttcagtatttggctgcaggtg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3379401 acagatataatatgaatctcttgatttgtaaagtatcaaaaacaatatatactcatttagtgacgccctcctgttttgcttcagtatttggctgcaggtg 3379500  T
Q  201 atgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggctgccctttgctt 300  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379501 atgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggctgccctttgctt 3379600  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 3362460 - 3362589
Alignment:
Q  171 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 270  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||| |||| ||  ||||||||||||| ||| ||||| |||     
T  3362460 ctgttttgcttcagtatttggctgcaggtgttgtgccaataaagcttcccacaccttgtatcaatctcagacatctttccttatgcatagacttcgatga 3362559  T
Q  271 cttgaaggaaatttcggctgccctttgctt 300  Q
    ||||||| |||||| |||||| ||||||||    
T  3362560 cttgaagaaaattttggctgctctttgctt 3362589  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 3373416 - 3373577
Alignment:
Q  139 aaaacaatatatactcaattagtgacgccctcctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctg 238  Q
    |||||| ||||| || | |||||||||  || || ||||| || ||||||||||||||| |||||| ||||||||||||||| |||||||||||   ||     
T  3373416 aaaacattatattctgatttagtgacgttcttctattttgttttagtatttggctgcagatgatgtgccagtaaagcttcctgcaccttgtatcagccta 3373515  T
Q  239 agttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggctgccctttgctt 300  Q
     || | ||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||    
T  3373516 tgtgagctttccttatgcataaacttcaatgacttgaaggaaatttcagctgctctttgctt 3373577  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 4334312 - 4334187
Alignment:
Q  172 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtc 271  Q
    |||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||  |||| |||| ||||||||||   ||||||||| ||  |    
T  4334312 tgttatgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataac 4334213  T
Q  272 ttgaaggaaatttcggctgccctttg 297  Q
     || ||||||||||||| || |||||    
T  4334212 atggaggaaatttcggccgctctttg 4334187  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 4322424 - 4322347
Alignment:
Q  172 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttc 249  Q
    |||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||| |||| ||||||    
T  4322424 tgttctgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttc 4322347  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 2007223 - 2007327
Alignment:
Q  181 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||  ||||||||||| ||| ||| ||||||    
T  2007223 tcagtatttggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaa 2007322  T
Q  281 atttc 285  Q
    |||||    
T  2007323 atttc 2007327  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 3217892 - 3217769
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaa 276  Q
    ||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| || | |||| ||||| | |||| ||||  ||||||| ||||||    
T  3217892 tgcttcagtatttggatgcaggtgatgtgccggtaaaacttccgacaccttgtatcaatttaagttctcttttcatatgcataaggttcaatgacttgaa 3217793  T
Q  277 ggaaatttcggctgccctttgctt 300  Q
      |||||| |||||| ||||||||    
T  3217792 acaaattttggctgctctttgctt 3217769  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 3341995 - 3342060
Alignment:
Q  172 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatct 237  Q
    |||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||    
T  3341995 tgttttgcctcagtatttggctgcaggtattgtgccagtaaagcttcctacaccttgtatcaatct 3342060  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 2012706 - 2012810
Alignment:
Q  181 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 280  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||| ||||||||||| | | |||||| |||    
T  2012706 tcagtatttagctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaa 2012805  T
Q  281 atttc 285  Q
    |||||    
T  2012806 atttc 2012810  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 6601132 - 6601008
Alignment:
Q  174 ttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtctt 273  Q
    ||||||| ||||||||||||   || | ||||||||||||||||||||| ||||| || ||||| |||||||||||| || | ||||||||| |||  |     
T  6601132 ttttgctccagtatttggctctgggggctgtaccagtaaagcttcctaccccttgcattgatctaagttatctttccatacgcataaacttctatgattc 6601033  T
Q  274 gaaggaaatttcggctgccctttgc 298  Q
     ||||||||||| ||||| ||||||    
T  6601032 aaaggaaatttcagctgctctttgc 6601008  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 1793451 - 1793563
Alignment:
Q  179 cttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaagg 278  Q
    |||||||||||  ||||||||| ||| |||  || ||||||||||||||||||| || | |  |||||||  ||| | ||||||||||||| ||||||||    
T  1793451 cttcagtatttatctgcaggtgttgtgccaacaatgcttcctacaccttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaagg 1793550  T
Q  279 aaatttcggctgc 291  Q
    ||||||| |||||    
T  1793551 aaatttcagctgc 1793563  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 2011209 - 2011313
Alignment:
Q  181 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 280  Q
    ||||||||| |||||||||| ||| ||| ||||||||||||||||||||||  |||| |  | ||| |  ||| |||||||||||||||  |||||||||    
T  2011209 tcagtatttagctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaa 2011308  T
Q  281 atttc 285  Q
    |||||    
T  2011309 atttc 2011313  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 2020466 - 2020566
Alignment:
Q  185 tatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaaattt 284  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||  ||||||||||| ||| ||| ||||||||||    
T  2020466 tatttagctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaattt 2020565  T
Q  285 c 285  Q
    |    
T  2020566 c 2020566  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 3193437 - 3193366
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 248  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3193437 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3193366  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 3202255 - 3202184
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 248  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3202255 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3202184  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 3211092 - 3211021
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 248  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3211092 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3211021  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 3373252 - 3373334
Alignment:
Q  3 attattttttaaaggtata---atgcacatacatctgaatgcggaacttaactgtaggagtgactaacctaattcttgtttaa 82  Q
    |||||||||||||||||||   |||| ||  ||| ||||||  ||| || ||||||||||||||| |||||||||||||||||    
T  3373252 attattttttaaaggtatattaatgctcaagcatatgaatgtagaatttgactgtaggagtgactcacctaattcttgtttaa 3373334  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 2947841 - 2947732
Alignment:
Q  168 ctcctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaa 267  Q
    |||||||||||||| ||||||||||| |||||   || |||| ||| ||||||||||  ||| || |||| || | | ||| ||| || |||||||||||    
T  2947841 ctcctgttttgctttagtatttggctacaggtatcgtgccagaaaaacttcctacactgtgtgtcaatctaagatctatttgcttgtggataaacttcaa 2947742  T
Q  268 tgtcttgaag 277  Q
    || |||||||    
T  2947741 tgacttgaag 2947732  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 6591846 - 6591754
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatg 269  Q
    |||| ||||||||||||  ||| | ||| |||||| |||||||||| |  || || ||||| |||||| ||||| |||| |||||||||||||    
T  6591846 tgctccagtatttggctttaggggttgtgccagtagagcttcctacccggtgcattgatctaagttatatttccatatgcataaacttcaatg 6591754  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 20953718 - 20953841
Alignment:
Q  177 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaa 276  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||  |||| || |||||||||||||| ||||||||| |   | | ||    
T  20953718 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatctttccttatgcataaacttcgacaacctaaa 20953817  T
Q  277 ggaaatttcggctgccctttgctt 300  Q
    ||||||||||||||| ||||||||    
T  20953818 ggaaatttcggctgctctttgctt 20953841  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 20935174 - 20935303
Alignment:
Q  171 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 270  Q
    |||||| |||||||||| || ||||||||| | | |||  ||||||||||||||||||||| ||||| ||| ||||||||||  | ||||||||| |||     
T  20935174 ctgtttcgcttcagtatctgactgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgatga 20935273  T
Q  271 cttgaaggaaatttcggctgccctttgctt 300  Q
    ||||||||||||||||||||| ||||||||    
T  20935274 cttgaaggaaatttcggctgctctttgctt 20935303  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 20924173 - 20924302
Alignment:
Q  171 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 270  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||||  |||| |  | ||||||| ||||  |||||||||| |     
T  20924173 ctgttttgcttcagtatttggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttcaacga 20924272  T
Q  271 cttgaaggaaatttcggctgccctttgctt 300  Q
    ||||| ||||||||||||||  ||||||||    
T  20924273 cttgacggaaatttcggctgttctttgctt 20924302  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 39274720 - 39274849
Alignment:
Q  177 tgcttcagtatttggctgcaggtgat------gtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 270  Q
    ||||||||||||||||||||||||||      || |||||||||||||||||  ||| | || || | |||| ||||| | |||||||||  |||||||     
T  39274720 tgcttcagtatttggctgcaggtgatgtgccagtgccagtaaagcttcctactacttttgtcaatttaagttttcttttcatatgtataaggttcaatga 39274819  T
Q  271 cttgaaggaaatttcggctgccctttgctt 300  Q
    | |||||||| ||| |||||| ||||||||    
T  39274820 catgaaggaagttttggctgctctttgctt 39274849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 21238223 - 21238352
Alignment:
Q  171 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 270  Q
    ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||  |||| ||  ||||||  |||   |||||||||||||     
T  21238223 ctgttctgcttcagtatttggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaagccatcttttgttaaacataaacttcaatga 21238322  T
Q  271 cttgaaggaaatttcggctgccctttgctt 300  Q
    |||||||||||| |||||||| || |||||    
T  21238323 cttgaaggaaatctcggctgctctctgctt 21238352  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 17970509 - 17970585
Alignment:
Q  171 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctt 247  Q
    ||||||||||| |||||||||||||||||  ||| |||||| ||||||| ||||||  ||| ||||| |||| ||||    
T  17970509 ctgttttgctttagtatttggctgcaggtattgttccagtagagcttccgacacctattattgatcttagttctctt 17970585  T

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