View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_26 (Length: 288)
Name: NF19069_low_26
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 20491757 - 20492027
Alignment:
| Q |
1 |
aaactctgccttcatatatatcccaatcagaactttatcactacatccatctttaactctttctttcaaccgttctcatggattcaattgttaatcatga |
100 |
Q |
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| T |
20491757 |
aaactctgccttcatatatatcccaatcagaaccttatcactacatccatctttaactctttctttgaaccgttctcatggattcaattgttaatcatga |
20491856 |
T |
|
| Q |
101 |
aaatggtaacaacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20491857 |
aaatggtaacaacaagcctcttcatgttgtaatgatcccttggctagctatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaag |
20491956 |
T |
|
| Q |
201 |
ggtcacactgtcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaagcaattca |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20491957 |
ggtcacactgtcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaagcaattca |
20492027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 263
Target Start/End: Original strand, 1361066 - 1361219
Alignment:
| Q |
110 |
caacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacact |
209 |
Q |
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|||||| ||||||||| |||||||| |||||||| | || ||||||||||| |||||||| || || |||| |||||||| ||| ||||||||||||| |
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| T |
1361066 |
caacaaacctcttcatattgtaatgctcccatggctggctatgggacacatatacccttactttgaagtagccaaaattctagcttcaaagggtcacact |
1361165 |
T |
|
| Q |
210 |
gtcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaa |
263 |
Q |
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| T |
1361166 |
gtcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaa |
1361219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 1354181 - 1354333
Alignment:
| Q |
111 |
aacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactg |
210 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||| |||| |||||||| || |||||||| || || |||| |||||||| ||| |||||||||||||| |
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| T |
1354181 |
aacaaacctcttcatattgtaatgctcccatggctagctatgggacatatatacccttactttgaagtagccaaaattctagcttcaaagggtcacactg |
1354280 |
T |
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| Q |
211 |
tcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaa |
263 |
Q |
| |
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|||||||||| |||||||| ||||||||||| |||||||| ||| |||||||| |
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| T |
1354281 |
tcaccttcatcaactcccctaaaaacattgaccaaatgccaaaaacacccaaa |
1354333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 1356941 - 1356996
Alignment:
| Q |
111 |
aacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtaccc |
166 |
Q |
| |
|
||||| |||||||||||||| ||| | |||||| |||||||||||||||||||||| |
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|
| T |
1356941 |
aacaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtaccc |
1356996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 11529699 - 11529857
Alignment:
| Q |
113 |
caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtc |
212 |
Q |
| |
|
||||||||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||| |
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| T |
11529699 |
caagcctcttcatgttgcaatgctcccttggctagctatgggacacatatacccttattttgaattggccaaaattcttgctcaaaagggtcacactgtc |
11529798 |
T |
|
| Q |
213 |
accttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaagcaattca |
271 |
Q |
| |
|
||||| |||| ||| || ||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
11529799 |
accttaataacctctcctaaaaacattgatcaaattcccaaaacaccaaaagcaattca |
11529857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 14588115 - 14588307
Alignment:
| Q |
77 |
catggattcaattgttaatcatgaaaatggtaacaa------caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttat |
170 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||| |||| | ||||||||||||||| | |||||| |||| ||||||||||| |||| | |
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| T |
14588115 |
catggcttcaattgttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacctttt |
14588214 |
T |
|
| Q |
171 |
ttcgagttagcaaaaattcttgctcaaaagggtcacactgtcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaa |
263 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
14588215 |
ttcgagttagccaaaattcttgctcaaaatggtcacactgtcacattcataaactcccctaaaaacattgatcaaatgcccaaaacacccaaa |
14588307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 14621773 - 14621965
Alignment:
| Q |
77 |
catggattcaattgttaatcatgaaaatggtaacaa------caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttat |
170 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||| |||| | ||||||||||||||| | |||||| |||| ||||||||||| |||| | |
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| T |
14621773 |
catggcttcaattgttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacctttt |
14621872 |
T |
|
| Q |
171 |
ttcgagttagcaaaaattcttgctcaaaagggtcacactgtcaccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaa |
263 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
14621873 |
ttcgagttagccaaaattcttgctcaaaatggtcacactgtcacgttcataaactcccctaaaaacattgatcaaatgcccaaaacacccaaa |
14621965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 12845690 - 12845828
Alignment:
| Q |
112 |
acaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgt |
211 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||| ||| |
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| T |
12845690 |
acaagcctcttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaagggtcactatgt |
12845789 |
T |
|
| Q |
212 |
caccttcataaactcccccaaaaacattgatcaaatgcc |
250 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| || ||||| |
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|
| T |
12845790 |
taccttcataaacagccctaaaaatattgaccacatgcc |
12845828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 271
Target Start/End: Original strand, 29953660 - 29953892
Alignment:
| Q |
39 |
cactacatccatctttaactctttctttcaaccgttctcatggattcaattgttaatcatgaaaatggtaacaacaagcctcttcatgttgtaatgatcc |
138 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||| |||| || ||||||||||||||| |||||| ||| |
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|
| T |
29953660 |
cactacatccatccatagctctttctttaaaccgtttccatggattcaattgttaagcatgagaatgagaattgcaagcctcttcatgtcgtaatgctcc |
29953759 |
T |
|
| Q |
139 |
catggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtcaccttcataaactcccccaaaaacat |
238 |
Q |
| |
|
| || | || ||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||| || |||| ||| ||| || ||| |
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|
| T |
29953760 |
cttgactcgctatgggacacatatacccttatttcgagttggccaagattcttgctcaaaatcgtcacactgtcacatttataagctctcccggaatcat |
29953859 |
T |
|
| Q |
239 |
tgatcaaatgcccaaagcacccaaagcaattca |
271 |
Q |
| |
|
||||||||| || ||| |||||||| ||||||| |
|
|
| T |
29953860 |
tgatcaaattccgaaaccacccaaaacaattca |
29953892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 51370718 - 51370561
Alignment:
| Q |
114 |
aagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtca |
213 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | || ||||||||| | ||||||||| ||||| || ||||||||||||||||| ||||||||||||| |
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|
| T |
51370718 |
aagcctcttcatgttgcaatgctcccatggcttgctatgggacacgtactcccttattttgagttggccaaaattcttgctcaaaatggtcacactgtca |
51370619 |
T |
|
| Q |
214 |
ccttcataaactcccccaaaaacattgatcaaatgcccaaagcacccaaagcaattca |
271 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||| || ||| |||||||| ||||||| |
|
|
| T |
51370618 |
cctttatcaactctcccaaaaacattgatcaaattcctaaaccacccaaaacaattca |
51370561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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