View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_31 (Length: 257)
Name: NF19069_low_31
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 6586670 - 6586882
Alignment:
| Q |
32 |
tcaattcaaataaatgtgaaacaatgatgatatgaggttcattaattattatattggctaattagaactatgattcttcagctgcactgccttcactttc |
131 |
Q |
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| T |
6586670 |
tcaattcaaataaatgtgaaacaatgatgatatgaggttcattaattattatattggctaattagaactatgattcttcagctgcactgccttcactttc |
6586769 |
T |
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| Q |
132 |
aattttttcaatatatattttgaaaagtaaagggattgtttttgaggatgttatgcttagagttttatagatttgtgttaaatttgaccacagacctact |
231 |
Q |
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| T |
6586770 |
aattttttcaatatagattttgaaaagtaaaggggttgtttttgaggatgttatgcttagagttttatagatttgtgttaaatttgagcacagacctact |
6586869 |
T |
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| Q |
232 |
attatttcccaat |
244 |
Q |
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| T |
6586870 |
attattttccaat |
6586882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 29659728 - 29659823
Alignment:
| Q |
59 |
tgatatgaggttcattaattattatattggctaattagaactatgattcttcagctgcactgccttcactttcaattttttcaatatatattttga |
154 |
Q |
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| T |
29659728 |
tgatacgagattcataaattattatataggttaattagaactaagattccgcagttgcactgccttcacttttaattatggcaatataaattttga |
29659823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 29719708 - 29719807
Alignment:
| Q |
59 |
tgatatgaggttcattaattattatat----tggctaattagaactatgattcttcagctgcactgccttcactttcaattttttcaatatatattttga |
154 |
Q |
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| T |
29719708 |
tgatataaggttcattaattattatatatattgtttaattagaactaagattccacagttggactgccttcacttttaattttggcaatatagattttga |
29719807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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