View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19069_low_33 (Length: 253)
Name: NF19069_low_33
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 1091963 - 1092180
Alignment:
| Q |
24 |
tggtattcacttcaccttttagatatatgcatgactaattttgtaaatctataaaatgtgggaagaagaaagagaagagaagcaaaacatacccatacat |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1091963 |
tggtgttcacttcaccttttagatatatgcatgactaattttgtaaatctataaaatgtgggaagaagaaagagaagagaagcaaaacatacccatacat |
1092062 |
T |
|
| Q |
124 |
atacatgtccttatcaatctttttcctacaccatcgacaagcatgtaggaatccctctggcaatgttggtgatgtccttttggtcggagcatcgaaggct |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092063 |
atacatgtccttatcaatctttttcctacaccatcgacaagcatgtaggaatccctctggcaatgttggtgatgtccttttggtcggagcatcgaaggct |
1092162 |
T |
|
| Q |
224 |
ggaaaacccagtgagaat |
241 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1092163 |
ggaaaacccagtgagaat |
1092180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 36524655 - 36524862
Alignment:
| Q |
34 |
ttcaccttttagatatatgcatgactaattttgtaaatctataaaatgtgggaagaagaaagagaagagaagcaaaacatacccatacatatacatgtcc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
36524655 |
ttcaccttttagatatatgcatgactaatgttgtaaatctatgaaatatgggaagaagaaagagaagagaaataatacatacccatacatatatctgtcc |
36524754 |
T |
|
| Q |
134 |
ttatcaatctttttcctacaccatcgacaagcatgtaggaatccctctggcaatgttggtgatgtccttttggtcggagcatcgaaggctggaaaaccca |
233 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
36524755 |
ttctcaatctttttcctacaccagcgacaagcatgtaggaatccctctggcaatgctggtgatgtccttttggtcggagcgtctaaggctgggaaaccca |
36524854 |
T |
|
| Q |
234 |
gtgagaat |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
36524855 |
gtgagaat |
36524862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 18010348 - 18010399
Alignment:
| Q |
29 |
ttcacttcaccttttagatatatgcatgactaattttgtaaatctataaaat |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
18010348 |
ttcacttcaccttttagatatatgcatgattaatgttgtaaatctatgaaat |
18010399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 17923081 - 17923001
Alignment:
| Q |
98 |
aagagaagcaaaacatacccatacatatacatgtccttatcaatctttttcctacaccatcgacaagcatgtaggaatccc |
178 |
Q |
| |
|
||||||| ||| |||||||||||||||||| | || | |||||||| ||| | ||||| || ||||| |||||||||||| |
|
|
| T |
17923081 |
aagagaaacaatacatacccatacatatacctctcttcttcaatcttcttcttgcaccaccgtcaagcttgtaggaatccc |
17923001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 18103195 - 18103407
Alignment:
| Q |
29 |
ttcacttcaccttttagatatatgcatgactaattttgtaaatctataaaatgtgggaagaagaaagagaagagaagcaaaacatacccatacatataca |
128 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
18103195 |
ttcacttcaccttttggatatatgcatgactaatgttgtatatctatgaaatgtgggaagaagaaagagaagagaaacaatacatacccatacatatacg |
18103294 |
T |
|
| Q |
129 |
tgtccttatcaatctttttcctacaccatcgacaagcatgtaggaatccctctggcaatgttggtgatgtccttttggtcggagcatcgaaggctggaaa |
228 |
Q |
| |
|
| ||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||| |||||||| || |
|
|
| T |
18103295 |
tatccttctcaatctttttcttacaccatcgacaagcatgtaagaatccctttggcaatgctgatgatgtccttttggtcggagcatctaaggctggtaa |
18103394 |
T |
|
| Q |
229 |
acccagtgagaat |
241 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
18103395 |
acccaatgagaat |
18103407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University