View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_35 (Length: 251)
Name: NF19069_low_35
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 49 - 251
Target Start/End: Complemental strand, 5811824 - 5811622
Alignment:
| Q |
49 |
gaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
148 |
Q |
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| T |
5811824 |
gaagtggtgcccaagagttagatctagagggccaagaagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
5811725 |
T |
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| Q |
149 |
gaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgttttt |
248 |
Q |
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| T |
5811724 |
gaaattatcaaatccagaagttaagaaagaagttcctgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgttttt |
5811625 |
T |
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| Q |
249 |
cct |
251 |
Q |
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||| |
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| T |
5811624 |
cct |
5811622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 37743433 - 37743205
Alignment:
| Q |
9 |
gaagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttg |
108 |
Q |
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| T |
37743433 |
gaagaaaatcgttgtaataacccttctgaaacaaccccaagaagtggtgctcaagagttagatctagaagaccaaaaaaataccgttggaaaggatgttg |
37743334 |
T |
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| Q |
109 |
ccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacg |
208 |
Q |
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| T |
37743333 |
ccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccg |
37743234 |
T |
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| Q |
209 |
taatctgccatacacgaccacgtactttc |
237 |
Q |
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| T |
37743233 |
taatctgccatattcgaccacgtaatttc |
37743205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 37764615 - 37764393
Alignment:
| Q |
10 |
aagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgc |
109 |
Q |
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| T |
37764615 |
aagaaaatcgtggtaataacccttttgaaagaacaccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagc |
37764516 |
T |
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| Q |
110 |
caatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgt |
209 |
Q |
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| T |
37764515 |
caatgataagtctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgt |
37764416 |
T |
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| Q |
210 |
aatctgccatacacgaccacgta |
232 |
Q |
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| T |
37764415 |
aatctgccatattcgaccacgta |
37764393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 38601700 - 38601928
Alignment:
| Q |
9 |
gaagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttg |
108 |
Q |
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||||||||| ||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||| | |
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| T |
38601700 |
gaagaaaatcgtggtaataaccctgttgaaagaaccccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtag |
38601799 |
T |
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| Q |
109 |
ccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacg |
208 |
Q |
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| T |
38601800 |
ccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaatataagaaaggagtttctgagccgtgtcgactgtttgtcct |
38601899 |
T |
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| Q |
209 |
taatctgccatacacgaccacgtactttc |
237 |
Q |
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|||||||||||| |||||||||| |||| |
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| T |
38601900 |
taatctgccatattcgaccacgtaatttc |
38601928 |
T |
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