View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_38 (Length: 243)
Name: NF19069_low_38
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13753487 - 13753713
Alignment:
| Q |
1 |
tattgcacaatgttgttactttgggtattggcttagtcccctaagctccattttttccatcgtaattttaatctattttttaggttgctgcgaatcatga |
100 |
Q |
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| T |
13753487 |
tattgcacaatcttgttactttgggtattgacttagtcccctaagctccattttttccatcgtaattttaatctattttttaggttgctgcgaatcatga |
13753586 |
T |
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| Q |
101 |
ggcgatcgatttggggtgtcaacctagtttctatcgaaattctaattatgtggtgccctttattatcaatgaaaatatttattagaaagttaatatctat |
200 |
Q |
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| T |
13753587 |
ggctatcgatttggggtgtcaacctagtttctatcgaaattctaattatatggtgccctttattatcaatgaaaatatttattagaaagttaatatctat |
13753686 |
T |
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| Q |
201 |
caatacataaagattttacttacaaat |
227 |
Q |
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| T |
13753687 |
caatacataaagattttacttacaaat |
13753713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 6117874 - 6117970
Alignment:
| Q |
134 |
tcgaaattctaattatgtggtgccctttattatcaatgaaaatatt---tattagaaagttaatatctatcaatacataaagattttacttacaaatt |
228 |
Q |
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| T |
6117874 |
tcgaaattctaattatgtcgtgccctttactatctatgaaaacatttagtattagaaaattaatatctctctatacat-aagattttacttacaaatt |
6117970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 6117492 - 6117603
Alignment:
| Q |
7 |
acaatgttgttactttgggtattggcttagtcccctaagctccattttttccatcgtaattttaatctattttttaggttgctgcgaatcatgaggcgat |
106 |
Q |
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| T |
6117492 |
acaatattgttactttgggtattgatctagtctcgcaatctttattttttctatctttattttaatatattttttatgatgctgcaaatgatcagacgat |
6117591 |
T |
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| Q |
107 |
cgatttggggtg |
118 |
Q |
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| T |
6117592 |
cgatttggggtg |
6117603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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