View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_39 (Length: 241)
Name: NF19069_low_39
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3572026 - 3571807
Alignment:
| Q |
1 |
tgatcaataacgtacaaattcatgcatataacggtatataattatatatatgttgtagaagagggaccacattacatattggtcccattgctagttaatt |
100 |
Q |
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| T |
3572026 |
tgatcaataacgtacaaattcatgcatataacggtatataattatat----gttgtagaagagggaccacattacatattggtcccattgctagttaatt |
3571931 |
T |
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| Q |
101 |
tgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattataccannnnnnn |
200 |
Q |
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| T |
3571930 |
tgtggtgtgtgttgcatcaaatggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattataccattttttt |
3571831 |
T |
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| Q |
201 |
nactaaatgtcattataccgtatt |
224 |
Q |
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|||||||||||||||||| |||| |
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| T |
3571830 |
tactaaatgtcattataccatatt |
3571807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 3568946 - 3568808
Alignment:
| Q |
52 |
gttgtagaagagggaccacattacatattggtcccattgctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttt----tttggc |
147 |
Q |
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| T |
3568946 |
gttgaagaagagggaccatagtgcatattggtaccattgctagttaatttgtg-------ttgcatcaaaaggacaaagaatatttcttttttctttggc |
3568854 |
T |
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| Q |
148 |
tccatggataaaaacacatttatcctaattttatgtcattatacca |
193 |
Q |
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| T |
3568853 |
tcaatagataaaaaaacatttatcctaaaattatgtcattatacca |
3568808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 8602528 - 8602413
Alignment:
| Q |
75 |
catattggtcccattgctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatccta |
174 |
Q |
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| T |
8602528 |
catattggtcccattgctagttaatttgtggtgtgtgttacatcaaatggacaaaacttatttctttttttgctcaatggat-aaaacacattta-ccta |
8602431 |
T |
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| Q |
175 |
a-ttttatgtcattatac |
191 |
Q |
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| T |
8602430 |
atttttatgttattatac |
8602413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 8617497 - 8617387
Alignment:
| Q |
91 |
ctagttaatttgtggtgtgtattgcatcaaaaggacaaagaatatttcttttttgg-ctccatggata---------aaaacacatttatcctaatttta |
180 |
Q |
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| T |
8617497 |
ctagttaatttgtgttgtgtgttgaatcaaatggacaaaacatatttctttttttttctcaatggatataatcatataaaacacatttatcttaatttta |
8617398 |
T |
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| Q |
181 |
tgtcattatac |
191 |
Q |
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| T |
8617397 |
tgtcattatac |
8617387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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