View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_44 (Length: 228)
Name: NF19069_low_44
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 25539752 - 25539934
Alignment:
| Q |
17 |
agcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaagaaaattaacaacaaaaaatcatg |
116 |
Q |
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| T |
25539752 |
agcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaagaaaattaacaacaaaaaatcatg |
25539851 |
T |
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| Q |
117 |
gataaaacaaggtcacaaggaacatggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatg |
199 |
Q |
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| T |
25539852 |
gataaaacaaggtcacaaggaacatggataaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatg |
25539934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 25517703 - 25517643
Alignment:
| Q |
139 |
catggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatg |
199 |
Q |
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| T |
25517703 |
catggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatg |
25517643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 25517778 - 25517697
Alignment:
| Q |
37 |
agaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaag-aaaattaacaacaaaaaatcatggat |
119 |
Q |
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| T |
25517778 |
agaaatattacttttgctgcaaatgtgagaagtgtcttaca-tttaacataaacaagcaaatttaacaac-aaaaatcatggat |
25517697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 25540853 - 25540916
Alignment:
| Q |
17 |
agcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattt |
80 |
Q |
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| T |
25540853 |
agcagttccttcattagacaagaaatactacttttgctgcatatgtgagaggagtcttacattt |
25540916 |
T |
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