View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_5 (Length: 500)
Name: NF19069_low_5
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 3572040 - 3572537
Alignment:
| Q |
1 |
ttacaattggcaaactctcattggatgaaaaagatatttaatgatattattttaaaat---gtggatatttgatatgtttgggaaaggaagaaaataatt |
97 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
3572040 |
ttacaattggcaaactcttattggatgaaaaagatatttaatgatattattatatattattgtggatatttgatatgtttgggaaaggaagaaaataatt |
3572139 |
T |
|
| Q |
98 |
tatagagtggtatgtggtttgagaagcaactgtaatgttcaaaaccaatagaaagttagatacatagatttcataagatatggacatttaatttatcttg |
197 |
Q |
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| || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572140 |
tttaaagtgatatgtggtttgagaagcaactgtaatgctcaaaaccaatagaaagttagatacatagatttcataagatatggacatttaatttatcttg |
3572239 |
T |
|
| Q |
198 |
ttgaaaacaacatataaataacaccataacataacacattcaatatatccatcatcaacattgccaataaagatatttatttgtttacttagtaaacact |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572240 |
ttgaaaacaacatataaataacaccataccataacacattcaatatagccatcatcaacattgccaataaagatatttatttgtttacttagtaaacact |
3572339 |
T |
|
| Q |
298 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572340 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
3572439 |
T |
|
| Q |
398 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572440 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 298 - 495
Target Start/End: Complemental strand, 3585594 - 3585397
Alignment:
| Q |
298 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
397 |
Q |
| |
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||||| |||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
3585594 |
aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggcaatcaagctttccccttcgactccagaccttgtgatggg |
3585495 |
T |
|
| Q |
398 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
495 |
Q |
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| T |
3585494 |
aagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagccagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 309 - 495
Target Start/End: Original strand, 3575635 - 3575821
Alignment:
| Q |
309 |
atggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaagaattacca |
408 |
Q |
| |
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|||||| | ||||||||| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |
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| T |
3575635 |
atggctacatcaacaatggctctctcttcttcaacaatggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcacca |
3575734 |
T |
|
| Q |
409 |
tgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
495 |
Q |
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||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3575735 |
tgaggaaaacaaccaacaagaagaacgtcccttctggaagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 493
Target Start/End: Original strand, 3563623 - 3563840
Alignment:
| Q |
276 |
atttgtttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccct |
375 |
Q |
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||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
3563623 |
atttgtttacttagtaaggaataaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccat |
3563722 |
T |
|
| Q |
376 |
ctactccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaa |
475 |
Q |
| |
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| || | |||| ||| |||||||| | || ||||||||| |||||||||||||| |||||||||| |||| || ||||||||||||||||||||||| |
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| T |
3563723 |
ccacccaagacattggggtgggaagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaa |
3563822 |
T |
|
| Q |
476 |
gtacttgggtccattctc |
493 |
Q |
| |
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||||||||| |||||||| |
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| T |
3563823 |
gtacttgggcccattctc |
3563840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 281 - 493
Target Start/End: Original strand, 3569276 - 3569488
Alignment:
| Q |
281 |
tttacttagtaaacactaaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctact |
380 |
Q |
| |
|
|||||||||||| || ||||| | || |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| || ||| |
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| T |
3569276 |
tttacttagtaagcaaaaaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccact |
3569375 |
T |
|
| Q |
381 |
ccagaccttgtcatgggaagaattaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtact |
480 |
Q |
| |
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| |||| ||| |||||||| | || |||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
3569376 |
caagacattggggtgggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtact |
3569475 |
T |
|
| Q |
481 |
tgggtccattctc |
493 |
Q |
| |
|
|||| |||||||| |
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| T |
3569476 |
tgggcccattctc |
3569488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 302 - 492
Target Start/End: Original strand, 13275581 - 13275767
Alignment:
| Q |
302 |
ttctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatgggaaga |
401 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| | |||||||| || ||||| |
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| T |
13275581 |
ttctacaatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagg |
13275680 |
T |
|
| Q |
402 |
attaccatgaggaaaacaaccaccaagaagaatgttccttctcgaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattct |
492 |
Q |
| |
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| ||||||| ||||||||||| ||||| ||| |||| |||| || ||||| ||||||||||||||||||||| |||| ||||||| |
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|
| T |
13275681 |
gtcaccatga-aaaaacaaccac---aaagaaagtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct |
13275767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 3575427 - 3575500
Alignment:
| Q |
108 |
tatgtggtttgagaagcaactgtaatgttcaaaaccaatagaaagttagatacatagatttcataagatatggac |
182 |
Q |
| |
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|||||||||||||| | || ||||||| || ||||||||||||| | | | | |||||||||||||||||||||| |
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| T |
3575427 |
tatgtggtttgagatgtaagtgtaatgctccaaaccaatagaaaatca-agatatagatttcataagatatggac |
3575500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 495
Target Start/End: Original strand, 38356807 - 38356857
Alignment:
| Q |
445 |
gaagcccgtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
495 |
Q |
| |
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||||||| |||||||| ||||||||||| |||||||| || |||||||||| |
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| T |
38356807 |
gaagcccatggtacggcccagaccgtgttaagtacttaggcccattctctg |
38356857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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