View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_low_7 (Length: 445)

Name: NF19069_low_7
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_low_7
NF19069_low_7
[»] chr3 (11 HSPs)
chr3 (80-428)||(24359172-24359520)
chr3 (140-359)||(24362748-24362967)
chr3 (141-357)||(24346797-24347013)
chr3 (140-362)||(24355903-24356125)
chr3 (140-396)||(24352498-24352757)
chr3 (137-354)||(24370307-24370524)
chr3 (137-215)||(24364158-24364236)
chr3 (279-354)||(24364019-24364094)
chr3 (17-55)||(24358881-24358919)
chr3 (304-357)||(24314062-24314115)
chr3 (187-223)||(24403613-24403649)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 80 - 428
Target Start/End: Original strand, 24359172 - 24359520
Alignment:
Q  80 ttatgattatatattatagtgattgataatgctgttatgctatgcagtatgtaaatgcagatttaaaaggagttattgagaacaaagagaagcatgtgat 179  Q
    |||| |||||||||||||||||||||||||  | |||||||||||||| ||||  |  ||||||||||||  |||||||||||||||||||| ||||  |    
T  24359172 ttataattatatattatagtgattgataatagtattatgctatgcagtttgtacctttagatttaaaagggattattgagaacaaagagaagaatgttct 24359271  T
Q  180 tctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaatggtcgccgcctatcggccggttggtccttgtttgctcgt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||    
T  24359272 tctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaatggtcgccgcctatcggccggttgatccttgtttgcaagt 24359371  T
Q  280 gaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttctaggacaaagttaatgtat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359372 gaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttctaggacaaagttaatgtat 24359471  T
Q  380 ctgttttggatgctgttgtttctataactaagttaatgtatctttctag 428  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24359472 ctgttttggatgccgttgtttctataactaagttaatgtatctttctag 24359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 140 - 359
Target Start/End: Original strand, 24362748 - 24362967
Alignment:
Q  140 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 239  Q
    ||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||  |  |||    
T  24362748 atttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggaatgtgaaattgctccgttattacgaggctaaaaa 24362847  T
Q  240 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 339  Q
    |||||||| |||||| || |||||||||||||||||  |||||||||||||  ||   |||||||||||||||||||| || | ||||||| ||||||||    
T  24362848 tggtcgccacctatcagcaggttggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtgtctttgaactgacaaacaagcaagattta 24362947  T
Q  340 gtttttaaagttcatatttt 359  Q
    ||||||||| ||||| ||||    
T  24362948 gtttttaaaattcatgtttt 24362967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 24346797 - 24347013
Alignment:
Q  141 tttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaat 240  Q
    |||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||| |||||||||||| ||||| ||||  |  ||||    
T  24346797 tttaaatggggttattgagaacaaagaaaagtatgtgatgctgcagattgggaaaagatcatggaatctgaaattgctcccttattgcgaggctagaaat 24346896  T
Q  241 ggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttag 340  Q
    | ||||||||| |||||||||||||||||||||||| | |||||||||||  ||   |||||||||||||||||||| || ||||||||| | ||||| |    
T  24346897 gttcgccgcctttcggccggttggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtgtctttgaactgataaacaagaaggatttgg 24346996  T
Q  341 tttttaaagttcatatt 357  Q
    |||||||  ||||||||    
T  24346997 tttttaatattcatatt 24347013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 140 - 362
Target Start/End: Original strand, 24355903 - 24356125
Alignment:
Q  140 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 239  Q
    |||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||| |||  | | ||       |    
T  24355903 attttaaaggggttattgagaacaaagagaaggatgtgatgcttcagattgggaaaagatcatggaatgtgaaattgctctgttggtacaagcacactca 24356002  T
Q  240 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 339  Q
     ||||| ||||| |||||| | ||||||||||||||  | |||||||||||  |||| ||| ||||||||||||| || || ||||||||||||| ||||    
T  24356003 gggtcgtcgcctttcggccagatggtccttgtttgcaagagaaagtggactgcaacaaggaaatgtttgtgtcttcgaactgataaacaaggaaggttta 24356102  T
Q  340 gtttttaaagttcatattttcta 362  Q
    ||||||||||||||| |||||||    
T  24356103 gtttttaaagttcatgttttcta 24356125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 140 - 396
Target Start/End: Original strand, 24352498 - 24352757
Alignment:
Q  140 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 239  Q
    ||||||| || |||||||||||||| |||||| || || | || ||||||||  ||| ||||||||| |||||||||||   || || ||||  |   |     
T  24352498 atttaaagggggttattgagaacaaggagaagaatctggtgcttcagattggagaaagatcatggaaggtgaaattgcttgcttcttacgagcgtgagac 24352597  T
Q  240 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 339  Q
     ||||| ||||| || ||||| ||||||||||| |    ||| ||||||||  ||| || | |||||||||||||||| || |||||||||||| |||||    
T  24352598 gggtcgtcgcctttcagccggctggtccttgttcgtaaatgagagtggactgcaacctgaaaatgtttgtgtctttgaactgataaacaaggaaaattta 24352697  T
Q  340 gtttttaaagttcatattttcta---ggacaaagttaatgtatctgttttggatgctgtt 396  Q
    ||||||||||||||| |||||||   | ||| |||| |||||||||||||| ||| ||||    
T  24352698 gtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttttgtatgttgtt 24352757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 137 - 354
Target Start/End: Original strand, 24370307 - 24370524
Alignment:
Q  137 cagatttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagatttt 236  Q
    ||||||||||||| |||||||||||||| || |   ||||||| |||| ||||||||||| |||||||||||||||| | || |||| ||  |||         
T  24370307 cagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactacttcgttcttatgagggcaa 24370406  T
Q  237 aaatggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagat 336  Q
    |||||| || ||||| || || || |||| ||| |||||  | ||||||||||| |||   ||||||||||||||||||||  | ||||||||| |||||    
T  24370407 aaatggccgtcgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagat 24370506  T
Q  337 ttagtttttaaagttcat 354  Q
    || ||||||||| |||||    
T  24370507 ttggtttttaaaattcat 24370524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 24364236 - 24364158
Alignment:
Q  137 cagatttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaatt 215  Q
    ||||||||||||| |||||||||||||| || |   ||||||| |||| ||||||||||| ||||||||||||||||||    
T  24364236 cagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaatt 24364158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 24364094 - 24364019
Alignment:
Q  279 tgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcat 354  Q
    |||||||||||| |||   ||||||||||||||||||||  | ||||||||| ||||||| |||||||||||||||    
T  24364094 tgaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcat 24364019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24358881 - 24358919
Alignment:
Q  17 gtcagctggtaagttgaaaaacaacatttacattaatcc 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24358881 gtcagctggtaagttgaaaaacaacatttacattaatcc 24358919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 24314062 - 24314115
Alignment:
Q  304 gtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatatt 357  Q
    |||||||||||||| || ||||||||| | ||||| |||||||| |||||||||    
T  24314062 gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatatt 24314115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 24403613 - 24403649
Alignment:
Q  187 attgggaaaaaatcatggaatgtgaaattgctccgtt 223  Q
    |||||||||| | ||||||||||||||||||||||||    
T  24403613 attgggaaaagaacatggaatgtgaaattgctccgtt 24403649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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