View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_low_8 (Length: 442)
Name: NF19069_low_8
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 35430568 - 35430170
Alignment:
| Q |
10 |
agcacagagagggaatggatcattagcgaacctgaatgtacatagatataaatgaacataatgatgtaaaacggagtgaacttaggttttgtttaggagt |
109 |
Q |
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| T |
35430568 |
agcacagagagggaatggatcattagcgaacctgaatgtacagaaatataaatgaacataa----------cggagtgaacttaggttttgtttaggagt |
35430479 |
T |
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| Q |
110 |
ttggaggggagggaaaatatactctttaaannnnnnngaaagatttctctattttctcttatatttcatcattaggaagattactaatggggaaaccaat |
209 |
Q |
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| T |
35430478 |
ttagaggggagggaaaatatactctttaattttttttaaaagatttctcaattttctcttatatttcatcgttaggaagattactaaaggg-aaaccaat |
35430380 |
T |
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| Q |
210 |
gtgactatgttgcctcccttcccctcccctccaaactaccaaacatcattattaagattactaacaggaaaaactatgtgactactgaagattttctaga |
309 |
Q |
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| T |
35430379 |
gtgactatgttgcctcccttcccctcccctccaaactaccaaacatcattattaagattactaatgggaaaaactatgtgactgctgaagattttctaga |
35430280 |
T |
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| Q |
310 |
tgatgtacattcatatgattaaaattttctagatgacgtacactttctctgtgtacattcttcttttttcctaagtgctcctaaaagcgaagtaatggaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35430279 |
tgatgtacattcatatgattaaaattttctagatgacgtacactttctctgtgtacattcttcttttttcctaagtgctcctaaaagcgaagtaatggga |
35430180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 26571391 - 26571357
Alignment:
| Q |
88 |
aacttaggttttgtttaggagtttggaggggaggg |
122 |
Q |
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| T |
26571391 |
aacttaggttttgtttgggagtttggaggggaggg |
26571357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 8828798 - 8828770
Alignment:
| Q |
88 |
aacttaggttttgtttaggagtttggagg |
116 |
Q |
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| T |
8828798 |
aacttaggttttgtttaggagtttggagg |
8828770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 16625670 - 16625638
Alignment:
| Q |
222 |
cctcccttcccctcccctccaaactaccaaaca |
254 |
Q |
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| T |
16625670 |
cctcccttcccctcccctccaaactcccaaaca |
16625638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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