View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19069_low_9 (Length: 418)

Name: NF19069_low_9
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19069_low_9
NF19069_low_9
[»] chr8 (9 HSPs)
chr8 (8-404)||(44689954-44690350)
chr8 (248-395)||(37964385-37964532)
chr8 (8-73)||(44680689-44680754)
chr8 (248-382)||(27409938-27410073)
chr8 (248-366)||(27411005-27411124)
chr8 (247-395)||(37963448-37963597)
chr8 (294-395)||(7274419-7274521)
chr8 (335-379)||(35919237-35919281)
chr8 (142-210)||(45447074-45447142)
[»] chr2 (14 HSPs)
chr2 (153-395)||(31559294-31559537)
chr2 (141-349)||(9262677-9262885)
chr2 (147-319)||(31558022-31558195)
chr2 (301-378)||(43517851-43517929)
chr2 (301-401)||(28165858-28165962)
chr2 (163-317)||(7317479-7317634)
chr2 (307-377)||(30547821-30547892)
chr2 (301-395)||(40127442-40127537)
chr2 (295-395)||(5696137-5696238)
chr2 (301-401)||(44904730-44904836)
chr2 (257-320)||(22053308-22053371)
chr2 (253-320)||(22060291-22060358)
chr2 (346-395)||(30545994-30546042)
chr2 (303-377)||(44905952-44906028)
[»] chr1 (15 HSPs)
chr1 (74-395)||(9419557-9419877)
chr1 (74-378)||(28360769-28361078)
chr1 (271-395)||(27524466-27524591)
chr1 (248-382)||(28253383-28253519)
chr1 (279-382)||(37401206-37401311)
chr1 (294-395)||(43882243-43882345)
chr1 (308-382)||(37402399-37402474)
chr1 (301-382)||(12097709-12097791)
chr1 (301-377)||(13223115-13223193)
chr1 (305-381)||(35381586-35381663)
chr1 (301-396)||(13229032-13229131)
chr1 (301-401)||(40767823-40767927)
chr1 (305-383)||(12096080-12096159)
chr1 (301-381)||(32849698-32849780)
chr1 (141-210)||(46605845-46605914)
[»] chr7 (12 HSPs)
chr7 (143-404)||(20207746-20208003)
chr7 (73-210)||(20208387-20208524)
chr7 (301-377)||(19639753-19639830)
chr7 (301-395)||(41592960-41593055)
chr7 (301-401)||(38756862-38756966)
chr7 (301-395)||(38758082-38758178)
chr7 (154-210)||(5974245-5974301)
chr7 (74-258)||(38758191-38758376)
chr7 (301-395)||(41384356-41384451)
chr7 (301-381)||(37556301-37556383)
chr7 (305-377)||(5974354-5974427)
chr7 (301-377)||(5975440-5975517)
[»] chr3 (23 HSPs)
chr3 (166-395)||(34594321-34594549)
chr3 (141-381)||(33551650-33551893)
chr3 (141-319)||(34595590-34595769)
chr3 (235-395)||(27661259-27661421)
chr3 (142-379)||(32641146-32641386)
chr3 (270-376)||(27329020-27329127)
chr3 (142-251)||(26537482-26537592)
chr3 (279-383)||(26537590-26537695)
chr3 (248-395)||(27320432-27320580)
chr3 (8-73)||(41983565-41983630)
chr3 (301-395)||(27662376-27662471)
chr3 (294-395)||(1677172-1677274)
chr3 (301-381)||(39870651-39870732)
chr3 (306-388)||(26300752-26300841)
chr3 (301-378)||(31200720-31200798)
chr3 (308-395)||(27361399-27361487)
chr3 (301-349)||(3026684-3026733)
chr3 (301-377)||(13645049-13645126)
chr3 (301-349)||(39871948-39871997)
chr3 (72-133)||(55196572-55196633)
chr3 (301-377)||(3149460-3149539)
chr3 (308-395)||(27319669-27319757)
chr3 (65-101)||(32613874-32613910)
[»] chr4 (7 HSPs)
chr4 (151-379)||(4284143-4284372)
chr4 (151-292)||(4241507-4241647)
chr4 (301-401)||(34538328-34538432)
chr4 (301-376)||(11148548-11148625)
chr4 (296-377)||(2671733-2671815)
chr4 (294-395)||(20946050-20946152)
chr4 (74-186)||(34538126-34538238)
[»] scaffold0517 (2 HSPs)
scaffold0517 (279-382)||(6765-6870)
scaffold0517 (308-382)||(5602-5677)
[»] chr5 (3 HSPs)
chr5 (301-395)||(33489665-33489760)
chr5 (212-288)||(12890373-12890449)
chr5 (253-319)||(28592257-28592323)
[»] scaffold1176 (1 HSPs)
scaffold1176 (183-320)||(2160-2298)
[»] scaffold1118 (1 HSPs)
scaffold1118 (253-320)||(2592-2659)
[»] chr6 (2 HSPs)
chr6 (248-381)||(28050110-28050245)
chr6 (301-395)||(19580099-19580195)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 44689954 - 44690350
Alignment:
Q  8 gaaacatgaatctggccaaaatatattgttgaggtaattattagaaatattaaatagttatataatggcttaaatatgtaaaaggtcctagtaagttgga 107  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44689954 gaaacatcaatccggccaaaatatattgttgaggtaattattagaaatattaaatagttatataatggcttaaatatgtaaaaggtcctagtaagttgga 44690053  T
Q  108 ctatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaa 207  Q
    ||||||||||||||| ||| ||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690054 ctatttttgcttttaatccctgtatctttttttgttgtaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaa 44690153  T
Q  208 aaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690154 aaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggac 44690253  T
Q  308 taaaaccaaaaacaaatatttacataggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttcctctctctg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690254 taaaaccaaaaacaaatatttacataggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttcctctctctg 44690350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 37964532 - 37964385
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 346  Q
    |||||||||||||  |||| | |||||||||||||| ||||||  ||||| |  ||||||||||||||||||| || ||||||||| |||||||| | ||    
T  37964532 tgagttggcaaaagttgctgaggtggcatgagagatcataagtagtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaaat-aa 37964434  T
Q  347 aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||  |||  ||||||||| ||||||||||||  |||||| ||||    
T  37964433 aaacgtagacattaaattttgaattttaaaaaccaaactttccatcttc 37964385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 44680689 - 44680754
Alignment:
Q  8 gaaacatgaatctggccaaaatatattgttgaggtaattattagaaatattaaatagttatataat 73  Q
    ||||||| |||  |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  44680689 gaaacatcaatgcggccaaaatatagtgttgaggtaattattaggaatattaaatagttatataat 44680754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 382
Target Start/End: Original strand, 27409938 - 27410073
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 346  Q
    |||||||||||||  |||| | |||||||||||||| ||||||  ||||| |  ||||||| ||||||||||| || ||||||||| |||||||| ||||    
T  27409938 tgagttggcaaaagttgctgaggtggcatgagagatcataagtagtgttaatacagggacttaaaccaaaaacgaaaatttacatagggatgaaaataaa 27410037  T
Q  347 aaacgtaatcatcgaattttgaaatttaaaaaccaa 382  Q
     ||| ||  |||  ||||||||| ||||||||||||    
T  27410038 taacatagacattaaattttgaattttaaaaaccaa 27410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 27411124 - 27411005
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 346  Q
    |||||||||||||  || | | |||||||||||||||||||||  ||||| |  | |||||||||| ||||||| | ||||||||| |||||||||||||    
T  27411124 tgagttggcaaaagttgatgaagtggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaattaaa 27411025  T
Q  347 aaacgtaatcatcgaatttt 366  Q
    |||| ||| |||| ||||||    
T  27411024 aaacctaaacatcaaatttt 27411005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 37963448 - 37963597
Alignment:
Q  247 ttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacatag-gatgaaattaa 345  Q
    ||||||||||||||  || | | ||||||||||| |||||||||  ||||| |  | |||||||||  ||||||| | ||||| | || |||||||||||    
T  37963448 ttgagttggcaaaagttgatgaggtggcatgagaaatgataagtagtgttaatacaaggactaaaataaaaaacacaaatttatagagagatgaaattaa 37963547  T
Q  346 aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||| ||| || | ||||||||| ||||||||||||  |||||| ||||    
T  37963548 aaaacctaaacagcaaattttgaattttaaaaaccaaattttccatcttc 37963597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 7274521 - 7274419
Alignment:
Q  294 gttattcgagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 392  Q
    |||||| ||| |||||||||||||||   | ||||||||||| |||||| |||||||| |||||||| || |||||| |||||||   | ||||||||||    
T  7274521 gttattagagagactaaaaccaaaaatgcaaatttacatagggatgaaaataaaaaacataatcatcaaaatttgaattttaaaacttattatttccacc 7274422  T
Q  393 ttc 395  Q
    |||    
T  7274421 ttc 7274419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 35919237 - 35919281
Alignment:
Q  335 gatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaac 379  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||    
T  35919237 gatgtaattaaacaacgtaatcatcgaattttaaaatttaaaaac 35919281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 45447074 - 45447142
Alignment:
Q  142 ttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaa 210  Q
    |||| ||||| ||||||||| || ||||||||||| |||| ||||||  ||||| | ||||||||||||    
T  45447074 ttgcgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtcaccatccgttaaaaaa 45447142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 153 - 395
Target Start/End: Complemental strand, 31559537 - 31559294
Alignment:
Q  153 cccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagt 252  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| || ||||||||| |||||    
T  31559537 cccttgtatcttcttaactttttggaattggtccctaacgtcaacttccgttaaaaaaagttgtgctggctaacggaggcacacatgtcacttgatgagt 31559438  T
Q  253 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacg 351  Q
    |||||||||| | |||||||||||||||||||||||||| ||| |||  | ||||||||||||||||| |||||||||||| |||||||||||||| |||    
T  31559437 tggcaaaacacgtttatgtggcatgagagatgataagtgttgtgattacaaggactaaaaccaaaaacgaatatttacatagggatgaaattaaaacacg 31559338  T
Q  352 taatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  31559337 taatcatcgaattttgaaatttaaaaatcaatatttccaccttc 31559294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 349
Target Start/End: Complemental strand, 9262885 - 9262677
Alignment:
Q  141 gttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgt 240  Q
    ||||| |||||  ||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| | |||||||    
T  9262885 gttgcgaaacaatccttgtatcttgttatctttatggaattggtccctaacgtcaacttccattaaaaaaagttgtgctggctaacggagacttacgtgt 9262786  T
Q  241 cacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacataggatgaa 340  Q
    |||||  |||||||||||||||   ||||||||| |||||||||||||||| | | ||| |||||||||||||||||||  || | || ||  |||||||    
T  9262785 cacttactgagttggcaaaacacagttatgtggcgtgagagatgataagtgttatgattagagggactaaaaccaaaaaagaaaaattgcaagggatgaa 9262686  T
Q  341 attaaaaaa 349  Q
    |||||||||    
T  9262685 attaaaaaa 9262677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 31558022 - 31558195
Alignment:
Q  147 aaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgtcactt 245  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||  ||| || ||||||| ||||||  | |||||||||    
T  31558022 aaacaacccttgtatcttgttaactttttgaaattggcccctaacgtcaacttctgttaaaaaaaagttttgttggctaatagaggcgcatgtgtcactt 31558121  T
Q  246 gttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 319  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    ||| ||||||| |||||||||||    
T  31558122 gttgagttggcaaaacatgcttatgtggcatgagagataataagtgactagatttgagggaccaaaaccaaaaa 31558195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 43517929 - 43517851
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaa 378  Q
    |||||||||||||||||||| || ||| ||||| ||||||| |||||||| |||| |||| ||||||||| ||||||||    
T  43517929 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttgaattttaaaaa 43517851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 28165858 - 28165962
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-gga-tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 396  Q
    ||||||||||||| |||| |  || |||||||| ||| ||||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  28165858 gagggactaaaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcc 28165957  T
Q  397 tctct 401  Q
    |||||    
T  28165958 tctct 28165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 7317479 - 7317634
Alignment:
Q  163 ttgttaactttttggaattggtccctaacgtcatcttccgttaaa-aaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaac 261  Q
    |||||||||||||||  ||||||||||| || | |||| |||| | ||| | | || |||| ||| |||||| ||||||||||   |||  |  ||||||    
T  7317479 ttgttaactttttggttttggtccctaatgttaacttctgttacataaacgctttgttggcaaacggaggcacacgtgtcactcactgacataacaaaac 7317578  T
Q  262 atgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaa 317  Q
    ||||||||||||| ||| ||||||||| |||| | ||| ||| |||||||||||||    
T  7317579 atgcttatgtggcctgacagatgataactgatatgatttgagagactaaaaccaaa 7317634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 30547892 - 30547821
Alignment:
Q  307 ctaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    |||||||||||||   ||||||||||| ||| ||||||||||||| |||||||| |||||| ||||||||||    
T  30547892 ctaaaaccaaaaatgtatatttacataaggacgaaattaaaaaacataatcatcaaattttaaaatttaaaa 30547821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 40127442 - 40127537
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||||||||||||| || ||| ||||| ||||||| |||||||| |||| |||| |||||| || |||||||| |||  |||||| ||||    
T  40127442 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttaaattttaaaaatcaaactttccatcttc 40127537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 5696238 - 5696137
Alignment:
Q  295 ttattcgagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacct 393  Q
    ||||| ||||||||||||||||||||  | ||||||| ||| | |||| |||||||| |||||||| || |||||| |||||||   | |||||||||||    
T  5696238 ttattagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaacatattatttccacct 5696139  T
Q  394 tc 395  Q
    ||    
T  5696138 tc 5696137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 44904730 - 44904836
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa---cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccacctt 394  Q
    ||||||||||||  ||||||| || ||||||||||   |||||||||||||   |||||||||| |||||| ||||||| ||| ||||| ||||||||||    
T  44904730 gagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccacctt 44904829  T
Q  395 cctctct 401  Q
    | |||||    
T  44904830 catctct 44904836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 22053308 - 22053371
Alignment:
Q  257 aaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 320  Q
    |||||| ||||||||||| ||| | |||||||||||| | ||| ||||||| ||||||||||||    
T  22053308 aaaacacgcttatgtggcctgacaaatgataagtgatatgatttgagggaccaaaaccaaaaac 22053371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 22060358 - 22060291
Alignment:
Q  253 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 320  Q
    |||||||||||||||||| ||| ||| | |||||||||||| | ||| ||||||| |||| |||||||    
T  22060358 tggcaaaacatgcttatggggcctgacatatgataagtgatatgatttgagggacgaaaatcaaaaac 22060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 30545994 - 30546042
Alignment:
Q  346 aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||||||    
T  30545994 aaaacataatcatcaaattttgaaattt-aaaaccattatttccaccttc 30546042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 44906028 - 44905952
Alignment:
Q  303 gggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    |||||||||||||||||   || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||    
T  44906028 gggactaaaaccaaaaatgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaa 44905952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 74 - 395
Target Start/End: Complemental strand, 9419877 - 9419557
Alignment:
Q  74 ggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaacttt 173  Q
    ||||||||||||||||||||||| |||||||||  | ||||||||||||||||  ||||         | || ||||| |||||| ||||||||||||||    
T  9419877 ggcttaaatatgtaaaaggtccttgtaagttggcgtgtttttgcttttagtccgagtattttttt---tggcgaaacaacccttggatcttgttaacttt 9419781  T
Q  174 ttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtg 272  Q
    | | |||||||||| ||| | | ||||||||||||| | ||||||| |||||||  ||||| || ||||||||  ||||||||||||||| |||||||||    
T  9419780 tagaaattggtcccaaacattaacttccgttaaaaataagttgtgccggctaacgaaggcacacatgtcactttctgagttggcaaaacacgcttatgtg 9419681  T
Q  273 gcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaat 371  Q
    |||||| | |||||||||| ||| ||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  9419680 gcatgaaatatgataagtgttgtgattagagggaataaaaccaaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaat 9419581  T
Q  372 ttaaaaaccaatatttccaccttc 395  Q
    |||||||||||| |||||||||||    
T  9419580 ttaaaaaccaatctttccaccttc 9419557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 74 - 378
Target Start/End: Original strand, 28360769 - 28361078
Alignment:
Q  74 ggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaacttt 173  Q
    ||||||||||||| ||||||||| |||||||||   | ||||| ||||||||| ||||||       ||||| ||||| | |||||||||| ||||||||    
T  28360769 ggcttaaatatgttaaaggtccttgtaagttggcgcacttttggttttagtccttgtatctttttttgttgcgaaacaactcttgtatcttcttaacttt 28360868  T
Q  174 ttggaattggtccctaacgtcatcttccgtt----aaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttat 269  Q
    ||||||||| ||||||||||||  ||| |||    |||||| | ||||||| | ||| ||||||  ||||||||||| | ||| ||| |||||  |||||    
T  28360869 ttggaattgttccctaacgtcaggttcagttaaaaaaaaaaagatgtgctgacaaacggaggcacccgtgtcacttgctaagtaggc-aaacacacttat 28360967  T
Q  270 gtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttg 367  Q
    |||||||| ||||||||||||||    ||| |||| || |||| |||||||| | | ||||||| |||||||||| ||||||||||| |||| || |||     
T  28360968 gtggcatgcgagatgataagtgactagatttgaggaaccaaaatcaaaaacacaaaattacatagggatgaaattgaaaaaacgtaaacatcaaaattta 28361067  T
Q  368 aaatttaaaaa 378  Q
    ||| |||||||    
T  28361068 aaaattaaaaa 28361078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 395
Target Start/End: Original strand, 27524466 - 27524591
Alignment:
Q  271 tggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaa 369  Q
    ||||||||||||||||||||  ||||| |  |||||||||||||||||||| | ||||||||| |||||||||| |||||||||| |||| |||||||||    
T  27524466 tggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaaaaacgtaaacatcaaattttgaa 27524565  T
Q  370 atttaaaaaccaatatttccaccttc 395  Q
     ||||||||||||  |||||| ||||    
T  27524566 ttttaaaaaccaaactttccatcttc 27524591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 382
Target Start/End: Complemental strand, 28253519 - 28253383
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aa 345  Q
    |||||||||||||  |||| |  ||||||||||||||||||||  ||||| | |||||||||||| |||||||  | ||||||||| |||||||||| ||    
T  28253519 tgagttggcaaaatttgctgagatggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaa 28253420  T
Q  346 aaaacgtaatcatcgaattttgaaatttaaaaaccaa 382  Q
    |||| |||| |||| ||||||||| ||||||||||||    
T  28253419 aaaaggtaaacatcaaattttgaattttaaaaaccaa 28253383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 37401206 - 37401311
Alignment:
Q  279 gagatgataagtgatgttattcgagggactaaaacc-aaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaa 376  Q
    |||||||||||| |||||| |  ||||||||||||| ||||||| | ||||||||| ||||||| |||||||| |||| |||| ||||||||  ||||||    
T  37401206 gagatgataagtaatgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaa 37401305  T
Q  377 aaccaa 382  Q
    ||||||    
T  37401306 aaccaa 37401311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 43882243 - 43882345
Alignment:
Q  294 gttattcgagggactaaaaccaaaaacaaatatttacatag-gatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 392  Q
    |||||| |||||||||||||||||||| || |||||||||| || | || |||||||| |||||||| || |||||| |||||||   | ||||||||||    
T  43882243 gttattagagggactaaaaccaaaaacgaaaatttacatagagacggaaataaaaaacataatcatcaaaatttgaattttaaaacatattatttccacc 43882342  T
Q  393 ttc 395  Q
    |||    
T  43882343 ttc 43882345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 37402474 - 37402399
Alignment:
Q  308 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 382  Q
    ||||||||||||   | ||||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  37402474 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 37402399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 12097791 - 12097709
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 382  Q
    ||||||||||||||||||||  || ||||  |||| ||||||||||||||| |||| ||| | ||||||| ||||||||||||    
T  12097791 gagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaa 12097709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 13223115 - 13223193
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||||||||||||||||  || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||    
T  13223115 gagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaa 13223193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 35381586 - 35381663
Alignment:
Q  305 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaacca 381  Q
    |||||||| |||||||  || |||||||||| ||| |||||||||| ||||||||| | ||||||| |||||||||||    
T  35381586 gactaaaagcaaaaacgtatttttacatagggatgtaattaaaaaatgtaatcatcaatttttgaattttaaaaacca 35381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 396
Target Start/End: Complemental strand, 13229131 - 13229032
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg--atgaaatt-aaaaaacgtaatcatcga-attttgaaatttaaaaaccaatatttccaccttcc 396  Q
    ||||||||||||| ||||||| || ||||||||||   | ||||| |||||||||||||||| |  ||||||||||| ||| ||||| ||||||||||||    
T  13229131 gagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaattttttgaaattttaaacccaatctttccaccttcc 13229032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 40767823 - 40767927
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-gga-tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 396  Q
    ||||||||||||| ||||||  || |||||||| ||| ||||| ||||||| |||||||||| |||||| |||| || ||| ||||| ||||||||||||    
T  40767823 gagggactaaaacgaaaaacgcatttttacataaggactgaaactaaaaaaacgtaatcatcaaatttttgaaaatttaaacccaatttttccaccttcc 40767922  T
Q  397 tctct 401  Q
    |||||    
T  40767923 tctct 40767927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 12096080 - 12096159
Alignment:
Q  305 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaat 383  Q
    ||||||||||||||||  || ||||||  || ||||||||||||||| |||| ||| | ||||||| |||||||||||||    
T  12096080 gactaaaaccaaaaacgcatttttacacggggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaat 12096159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 32849780 - 32849698
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaa-cgtaatcatcgaattttgaaatttaaaaacca 381  Q
    ||||||||||||||||||||  || |||||| ||| ||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  32849780 gagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaacca 32849698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 46605914 - 46605845
Alignment:
Q  141 gttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaa 210  Q
    ||||| ||||| ||||||||| || ||||||||||| |||| ||||||  ||||| | ||||||||||||    
T  46605914 gttgcgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtcaccatccgttaaaaaa 46605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 143 - 404
Target Start/End: Original strand, 20207746 - 20208003
Alignment:
Q  143 tgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtc 241  Q
    ||||||||  ||||| |||||||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||  || |||||||    
T  20207746 tgcaaaacgacccttatatcttgttaactttttaaaattggtccctaacgtcaacttccgttaaaaataagttgtgctggctaacggaaacaaacgtgtc 20207845  T
Q  242 acttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttaca-taggatgaa 340  Q
    ||||| ||||||||||||||| |||||||| ||||||| ||||||||||  ||| ||| |||||||||||||||| |       |||||| | |||||||    
T  20207846 acttgctgagttggcaaaacacgcttatgtcgcatgagcgatgataagtattgtgattagagggactaaaaccaaca------ttttacagtgggatgaa 20207939  T
Q  341 attaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttcctctctctg 404  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  20207940 attaaaaaatgtaatcatctaattttgaaatttaaaaatcaatatttccaccttcatctctctg 20208003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 20208524 - 20208387
Alignment:
Q  73 tggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaactt 172  Q
    ||||||||||||||||||| |||  |||||||||  | |||||||||||||||| | ||||       ||||| ||||| |||||||||| |||||| ||    
T  20208524 tggcttaaatatgtaaaagatccctgtaagttggtgtgtttttgcttttagtccctctatcttttttagttgcgaaacaacccttgtatcatgttaaatt 20208425  T
Q  173 tttggaattggtccctaacgtcatcttccgttaaaaaa 210  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20208424 tttggaattggtccctaacgtcaacttccgttaaaaaa 20208387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 19639830 - 19639753
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    |||||| |||||| ||||||  || |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19639830 gagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaa 19639753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 41593055 - 41592960
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||||||||||||| || ||| ||||||| |||||||||||||| |||| |||| ||||||||| |||||||| |||  |||||| ||||    
T  41593055 gagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaagtaaacatcaaattttgaattttaaaaatcaaactttccatcttc 41592960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 38756862 - 38756966
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 396  Q
    ||||||||||||| ||||||| || ||||||||||   | ||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  38756862 gagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaaatttttgaaattttaaatccaatctttccaccttcc 38756961  T
Q  397 tctct 401  Q
    |||||    
T  38756962 tctct 38756966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 38758178 - 38758082
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| ||||||| |||||||| ||||||| |||||||||  || | |||||||||||    
T  38758178 gagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcattctttccaccttc 38758082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 5974245 - 5974301
Alignment:
Q  154 ccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaa 210  Q
    ||||||||||| ||||||||||| ||||||||| |||| ||| ||||||||| ||||    
T  5974245 ccttgtatcttcttaactttttgaaattggtccataacatcaacttccgttacaaaa 5974301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 38758376 - 38758191
Alignment:
Q  74 ggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaacttt 173  Q
    |||||||||| |||||||||||  ||||||| |    |||||| ||||||||| ||||||       ||||| ||||| ||||||||| |  ||||| ||    
T  38758376 ggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttacttaacctt 38758277  T
Q  174 ttggaattggtccctaacgtcatcttccgt-taaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaa 258  Q
    ||| |||||||||||| ||||   ||||||  ||||||||   || ||||||||||| ||||||||| ||| || ||| |||||||    
T  38758276 ttgaaattggtccctaccgtctatttccgtcaaaaaaatgcattgttggctaacagacgcatacgtggcacatgatgaattggcaa 38758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 41384356 - 41384451
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||||||||||||| || ||| ||||| ||||||| ||||||||  ||| |||| |||| |||| |||||||| |||  |||||| ||||    
T  41384356 gagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaaataaacatcaaattctgaattttaaaaatcaaactttccatcttc 41384451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 37556383 - 37556301
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaa-cgtaatcatcgaattttgaaatttaaaaacca 381  Q
    ||||||||||||||||||||  || |||||| ||| ||| |||||||||| ||||| |||| | ||||||| |||||||||||    
T  37556383 gagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaacca 37556301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 5974354 - 5974427
Alignment:
Q  305 gactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||||  ||||||| | ||||||| ||| || |||||||||||| |||||||| || ||||||||||||||    
T  5974354 gactaaaataaaaaacacaaatttacacagggataaaattaaaaaacataatcatcaaagtttgaaatttaaaa 5974427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 5975517 - 5975440
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||||||||| |||||   | ||||||||||| | ||||||||||||| |||||||| || ||| ||||||||||    
T  5975517 gagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaaaaacataatcatcaaaatttaaaatttaaaa 5975440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 166 - 395
Target Start/End: Original strand, 34594321 - 34594549
Alignment:
Q  166 ttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatg 264  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||| || |||||||||||| || ||||||||||| ||||| ||| | | |    
T  34594321 ttaactttttggaattggtccctaacgtaatcttccgttaaaaaaaagttgtgttgtctaacagaggcacacatgtcacttgttaagttgtcaagatacg 34594420  T
Q  265 cttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaat 363  Q
    |||| ||| ||||||||| ||||| || ||| ||| ||||||||||||||||||||  | ||||||||| ||||||||||||||||| ||||||| ||||    
T  34594421 cttacgtgacatgagagacgataattgttgtgattagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaaaaacataatcattgaat 34594520  T
Q  364 tttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||   |||||||||||| |||||| ||||    
T  34594521 tttga---ttaaaaaccaatctttccatcttc 34594549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 141 - 381
Target Start/End: Original strand, 33551650 - 33551893
Alignment:
Q  141 gttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccg-ttaaaaaatgttgtgctggctaacagaggcatacgtg 239  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||  ||||| |||||||| |||||||||| |||| |||||| || ||    
T  33551650 gttgcgaaacagcccttgtatcttcttaactttttggaattgatccctaacgtcaggttccgcttaaaaaaagttgtgctggttaacggaggcacacatg 33551749  T
Q  240 tcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatg 338  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    ||| || |||  ||||||||||||| | | || || | |||||    
T  33551750 tcacttgctgagtcggcaaaacacgcttatgtggcatgagagatgataagtgactagatttgaaggatcaaaaccaaaaacacaaaattgcacagggatg 33551849  T
Q  339 aaatta-aaaaacgtaatcatcgaattttgaaatttaaaaacca 381  Q
    ||| || |||||||||| |||| || ||||||||| ||||||||    
T  33551850 aaactagaaaaacgtaaacatcaaaatttgaaattaaaaaacca 33551893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 34595769 - 34595590
Alignment:
Q  141 gttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtg 239  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||||||||| ||| ||| ||||||||| ||| |||| |||||||||||||||  | |     
T  34595769 gttgcgaaacaacccttgtatcttgttaaccttttgaaattggtccctaacatcaactttcgttaaaaagatggtgtgatggctaacagaggcacgcata 34595670  T
Q  240 tcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 319  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||| |||||| ||| ||| |||||||||||||||||||    
T  34595669 tcacttgctgagttggcaaaacacgcttatgtggcatgaaagatggtaagtgttgtgattagagggactaaaaccaaaaa 34595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 395
Target Start/End: Original strand, 27661259 - 27661421
Alignment:
Q  235 acgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata- 333  Q
    ||||| || ||| |||| ||| |||||| |||||||||||||||||||||| || || ||||| | ||||||||||||| || |||| |||||||||||     
T  27661259 acgtgacaattgatgagatggaaaaacacgcttatgtggcatgagagatgacaactggtgttagtagagggactaaaacaaataacacatatttacatag 27661358  T
Q  334 ggatgaaattaaa-aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    || |||||||||| ||| ||||||||  |||||||||||||||||  ||| ||||||||||||    
T  27661359 gggtgaaattaaagaaatgtaatcataaaattttgaaatttaaaactcaaaatttccaccttc 27661421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 142 - 379
Target Start/End: Original strand, 32641146 - 32641386
Alignment:
Q  142 ttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaat-gttgtgctggctaacagaggcatacgtgt 240  Q
    |||| ||||| ||| | |||||| ||||| ||||||||||||||| ||| || |  || ||||||||||  |||||||| ||||||||||||| || ||     
T  32641146 ttgcgaaacaacccctatatcttcttaacattttggaattggtccttaatgttaggtttcgttaaaaaaaagttgtgctagctaacagaggcacacatgc 32641245  T
Q  241 cacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatga 339  Q
    ||||||||||| || ||||||| | ||||||||||||| |||| |||||||||   ||| ||||||| |||| |||||||  | | || || | ||||||    
T  32641246 cacttgttgagctgacaaaacacgtttatgtggcatgaaagataataagtgattagatttgagggaccaaaatcaaaaacgcaaaattgcagagggatga 32641345  T
Q  340 aatt-aaaaaacgtaatcatcgaattttgaaatttaaaaac 379  Q
    |||| ||||||||||| |||| || ||| ||||||||||||    
T  32641346 aattgaaaaaacgtaaacatcaaaatttaaaatttaaaaac 32641386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 376
Target Start/End: Original strand, 27329020 - 27329127
Alignment:
Q  270 gtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttga 368  Q
    |||||||||||||||||||||  ||||| |  | |||||||||||||||||| | ||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  27329020 gtggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaacatcaaattttga 27329119  T
Q  369 aatttaaa 376  Q
    | ||||||    
T  27329120 attttaaa 27329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 26537482 - 26537592
Alignment:
Q  142 ttgcaaaacagcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgtt-aaaaaatgttgtgctggctaacagaggcatacgtgt 240  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||| ||| || |||| ||| |||||| || |||    
T  26537482 ttgcgaaacaacccttgtatcttcttaactttttggaattggtccctaacgtcaacttccattaaaaaaaagttttgatggccaacggaggcacacatgt 26537581  T
Q  241 cacttgttgag 251  Q
    |||||| ||||    
T  26537582 cacttgatgag 26537592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 383
Target Start/End: Original strand, 26537590 - 26537695
Alignment:
Q  279 gagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||| || || ||||| | |||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||  |||||||||    
T  26537590 gagatgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaaaaacgtaatcatcaaattttacaatttaaaa 26537689  T
Q  378 accaat 383  Q
     |||||    
T  26537690 cccaat 26537695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 27320580 - 27320432
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaa 346  Q
    |||||||||||||  || | | |||||||||||||| ||||||  ||||| |  ||||||||||| ||||||| || ||||||||| |||||||| ||||    
T  27320580 tgagttggcaaaagttgttgaggtggcatgagagatcataagtagtgttaatacagggactaaaatcaaaaacgaaaatttacatagggatgaaaataaa 27320481  T
Q  347 aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||  |||  ||||||||| ||||||||||||  |||||| ||||    
T  27320480 aaacgtagacattaaattttgaattttaaaaaccaaactttccatcttc 27320432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 41983630 - 41983565
Alignment:
Q  8 gaaacatgaatctggccaaaatatattgttgaggtaattattagaaatattaaatagttatataat 73  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||    
T  41983630 gaaacattaatctggccaaaatatattgttgatgtaattattaggaatcttaaatagtcatataat 41983565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 27662471 - 27662376
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacataggatgaaattaa-aaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||||||||||| ||||||  ||||||||| |||| |||||||| ||||| |||| ||| ||||||||||||||||| ||  |||||||||||||    
T  27662471 gagggactaaaactaaaaacgcatatttacagaggacgaaattaaaaaaacataattatcaaattttgaaatttaaaatcctttatttccaccttc 27662376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 1677172 - 1677274
Alignment:
Q  294 gttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 392  Q
    |||||| ||||||||||||||||||||  | ||||||||| ||| |||| ||||||||||||||||| || |||||| |||||||   | ||||||||||    
T  1677172 gttattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacgtaatcatcaaaatttgaattttaaaacatattatttccacc 1677271  T
Q  393 ttc 395  Q
    |||    
T  1677272 ttc 1677274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 39870651 - 39870732
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaacca 381  Q
    |||||||||||| |||||||  || |||||||||| ||| |||||||||||||||||||| | ||||||| |||||||||||    
T  39870651 gagggactaaaatcaaaaacgtatttttacatagggatgtaattaaaaaacgtaatcatcaatttttgaattttaaaaacca 39870732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 26300752 - 26300841
Alignment:
Q  306 actaaaaccaaaaacaaatatttacata-ggatgaaatt------aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttc 388  Q
    ||||||||||||||||||||||| |||| ||||||||||      ||||||||||| ||| |||||||||||||| ||||||||| ||||    
T  26300752 actaaaaccaaaaacaaatatttgcatagggatgaaattgaaaaaaaaaaacgtaaacattgaattttgaaattttaaaaccaatctttc 26300841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 31200798 - 31200720
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaa 378  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| || ||||| |||| |||| ||||||||| ||||||||    
T  31200798 gagggactaaaaccaaaaacaaaaattgacataggcatgaattttaaaaaagtaaacatcaaattttgaattttaaaaa 31200720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 27361399 - 27361487
Alignment:
Q  308 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||||||| | ||||||||||| ||||||||||||||| |||  ||| ||||||||| |||||||| |||  |||||| ||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttc 27361487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 3026733 - 3026684
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaa 349  Q
    ||||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  3026733 gagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaa 3026684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 13645049 - 13645126
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||||||||||||||||  | ||||||||| ||| |||| |||||||| |||| ||| || |||||||| |||||    
T  13645049 gagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataataatcaaaatttgaaatgtaaaa 13645126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 39871997 - 39871948
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaa 349  Q
    ||||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  39871997 gagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaa 39871948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 55196572 - 55196633
Alignment:
Q  72 atggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatc 133  Q
    |||||||||||| | |||||||||| ||||||| |   ||||||| ||||||||||||||||    
T  55196572 atggcttaaataagaaaaaggtccttgtaagttcgcgcatttttggttttagtccatgtatc 55196633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 3149460 - 3149539
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt--aaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    ||||||||||||||||| ||  || |||||||| ||| ||||||  ||||||| |||||||| ||||||| |||||||||    
T  3149460 gagggactaaaaccaaagacgcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaa 3149539  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 27319669 - 27319757
Alignment:
Q  308 taaaaccaaaaacaaatatttacataggat-gaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    ||||||||| |||| | ||||||||||| | ||||||||||||| |||  ||| ||||||||| |||||||| |||  |||||| ||||    
T  27319669 taaaaccaagaacacaaatttacatagggttgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttc 27319757  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 32613874 - 32613910
Alignment:
Q  65 ttatataatggcttaaatatgtaaaaggtcctagtaa 101  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  32613874 ttatttaatggcttaaatatgtaaaaggtccttgtaa 32613910  T

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Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 151 - 379
Target Start/End: Complemental strand, 4284372 - 4284143
Alignment:
Q  151 agcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttga 250  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||  |||||||||||||  ||||| ||||||||||||||| | |||||||||| |||    
T  4284372 agcccttatatcttcttaactttttggaattggtccctaacatcaggttccgttaaaaaaaattgtgttggctaacagaggcacatgtgtcacttgctga 4284273  T
Q  251 gttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacatagga-tgaaatt-aaaaa 348  Q
    |||||||||  |  ||||||| |||||| |||||||||||||    ||| ||||||| ||||||||||||  | | || || |||| ||||||| |||||    
T  4284272 gttggcaaagtacacttatgt-gcatgaaagatgataagtgactagatttgagggaccaaaaccaaaaacgcaaaattgcagaggagtgaaattgaaaaa 4284174  T
Q  349 acgtaatcatcgaattttgaaatttaaaaac 379  Q
    |||||| ||||  | ||||||||||||||||    
T  4284173 acgtaaacatcataatttgaaatttaaaaac 4284143  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 4241647 - 4241507
Alignment:
Q  151 agcccttgtatcttgttaactttttggaattggtccctaacgtcatcttccgttaaaaaatgttgtgctggctaacagaggcatacgtgtcacttgttga 250  Q
    ||||||| |||||| |||| |||||||||||||||||||| ||||  ||| |||||||||  ||||| ||||||||||||||| | |||||||||| |||    
T  4241647 agcccttatatcttcttaaatttttggaattggtccctaatgtcaggttctgttaaaaaaaattgtgttggctaacagaggcacatgtgtcacttgctga 4241548  T
Q  251 gttggcaaaacatgcttatgtggcatgagagatgataagtga 292  Q
    ||||||||| ||  | ||||| |||||| |||||||||||||    
T  4241547 gttggcaaagcacacctatgt-gcatgaaagatgataagtga 4241507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 34538328 - 34538432
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagga--tgaaattaaaaaa-cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcc 396  Q
    ||||||||||||| ||||||  || ||||||||||   ||||||||||||| |||||||||| |||||| ||||||| ||| ||||| ||||||||||||    
T  34538328 gagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcc 34538427  T
Q  397 tctct 401  Q
    |||||    
T  34538428 tctct 34538432  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 11148548 - 11148625
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaa 376  Q
    ||||||||||||||||||||| || |||||||| ||| |||||| ||||||| |||||||| ||||||| ||||||||    
T  11148548 gagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaa 11148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 2671733 - 2671815
Alignment:
Q  296 tattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaa 377  Q
    |||| ||||||||||||||||||||  | ||||||||| ||| |||| |||||||| |||||||| || |||||| |||||||    
T  2671733 tattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaa 2671815  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 20946050 - 20946152
Alignment:
Q  294 gttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccacc 392  Q
    |||||| ||||||||||||||||||||| | ||||||| | ||| |||| |||||||  |||||||| || |||||| |||||||   | ||||||||||    
T  20946050 gttattagagggactaaaaccaaaaacacaaatttacacagggacgaaaataaaaaatataatcatcaaaatttgaattttaaaacatattatttccacc 20946149  T
Q  393 ttc 395  Q
    |||    
T  20946150 ttc 20946152  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 34538126 - 34538238
Alignment:
Q  74 ggcttaaatatgtaaaaggtcctagtaagttggactatttttgcttttagtccatgtatcnnnnnnngttgcaaaacagcccttgtatcttgttaacttt 173  Q
    ||||||||||||||||||||||  ||||||| |    |||||| ||||||||| ||||||       ||||| ||||| ||||||||| || ||||||||    
T  34538126 ggcttaaatatgtaaaaggtcccggtaagttagcacgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtattttcttaacttt 34538225  T
Q  174 ttggaattggtcc 186  Q
    ||| || ||||||    
T  34538226 ttgaaactggtcc 34538238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 6870 - 6765
Alignment:
Q  279 gagatgataagtgatgttattcgagggactaaaaccaaaaa-caaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaa 376  Q
    |||||||||||| |||||| |  |||||||||||||||||| || | ||||||||||| ||||| |||||||| |||| |||| ||||||||  ||||||    
T  6870 gagatgataagtaatgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaa 6771  T
Q  377 aaccaa 382  Q
    ||||||    
T  6770 aaccaa 6765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 5602 - 5677
Alignment:
Q  308 taaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaa 382  Q
    ||||||||||||   | ||||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  5602 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaa 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 33489760 - 33489665
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||| |||||||||  || |||||||||| | | ||||||||||| |||||||| |||||||||||||||||  || | |||||||||||    
T  33489760 gagggactaataccaaaaacgcatttttacatagggacggaattaaaaaacataatcatcaaattttgaaatttaaaattcattctttccaccttc 33489665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 12890373 - 12890449
Alignment:
Q  212 gttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataa 288  Q
    |||||| |||||||| ||| || || |||||||||  |||||||||||||| |||||||| |||||| |||||||||    
T  12890373 gttgtgatggctaacggagtcacacatgtcacttgccgagttggcaaaacacgcttatgttgcatgaaagatgataa 12890449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 28592257 - 28592323
Alignment:
Q  253 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaa 319  Q
    |||||||||| ||||||||||| ||| |||||||||||||| | ||| ||||||| |||||| ||||    
T  28592257 tggcaaaacacgcttatgtggcctgacagatgataagtgatatgatttgagggaccaaaacccaaaa 28592323  T

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Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 2160 - 2298
Alignment:
Q  183 gtccctaacgtcatcttccgtta-aaaaatgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagag 281  Q
    ||||||||||| | |||| |||| ||||| |||| |||||| ||| ||| || ||||| || ||  |||  |||||||||| ||||||||||| ||| |     
T  2160 gtccctaacgttaacttctgttacaaaaacgttgagctggcaaacggagtcacacgtggcaattactgacgtggcaaaacacgcttatgtggcctgaaaa 2259  T
Q  282 atgataagtgatgttattcgagggactaaaaccaaaaac 320  Q
    |||||||||||| | ||| ||||||| ||||||||||||    
T  2260 atgataagtgatatgatttgagggaccaaaaccaaaaac 2298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1118 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 2592 - 2659
Alignment:
Q  253 tggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaac 320  Q
    |||||||||||||||||| ||| ||| | ||||||| |||| | ||| ||||||| ||||||||||||    
T  2592 tggcaaaacatgcttatggggcctgacatatgataaatgatatgatttgagggacgaaaaccaaaaac 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 28050245 - 28050110
Alignment:
Q  248 tgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aa 345  Q
    |||||||||||||  |||| |  || |||||||||||||||||  ||||    ||||||||||||  ||||||  |||||||| || |||||||||| ||    
T  28050245 tgagttggcaaaagttgctgagatgacatgagagatgataagtattgttggcagagggactaaaataaaaaacgcatatttacgtagggatgaaattaaa 28050146  T
Q  346 aaaacgtaatcatcgaattttgaaatttaaaaacca 381  Q
    |||| |||| |||| || ||| ||||||||||||||    
T  28050145 aaaaagtaaacatcaaaatttaaaatttaaaaacca 28050110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 19580099 - 19580195
Alignment:
Q  301 gagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 395  Q
    |||||||||||||||||||| || ||| ||||| ||||||| || |||||| |||| |||| |||||| || |||||||| |||  |||||| ||||    
T  19580099 gagggactaaaaccaaaaacgaaaattaacatagggatgaatttaaaaaaaagtaaacatcaaatttttaattttaaaaatcaaactttccatcttc 19580195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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