View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_high_2 (Length: 510)
Name: NF1906_high_2
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 55179111 - 55178620
Alignment:
| Q |
1 |
tatagcaaatttgtttccaactatgaatatgattatgctaagtggcattatagaggatcctagaccgagtcttatcagcacggtggtccagtctgcatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55179111 |
tatagcaaatttgtttccaactatgaatatgattatgctaggtggcattatagaggatcctagaccgagtcttatcagcacggtggtccagtctgcatct |
55179012 |
T |
|
| Q |
101 |
ggcacagaccactcggagaatgaggatgagaaatcgaaaagccaagaaggtaacagaaaatgggaggaagaaacatttaaagaagagatgaaagtgtcat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
55179011 |
ggcacagaccactcagagaatgaggatgagaaatcgaaaagccaagaaggtaacagaaaatgggaggaagaaacatttaaaggagaaatgaaagtgtcat |
55178912 |
T |
|
| Q |
201 |
caagattatcaacatcacagaagcttggttggccacttctccgcaggatgcatacagaaatttcaagggacatgtctgttgtacaatgggtaatgaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178911 |
caagattatcaacatcacagaagcttggttggccacttctccgcaggatgcatacagaaatttcaagggacatgtctgttgtacaatgggtaatgaactt |
55178812 |
T |
|
| Q |
301 |
accggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaaaatgttattagtttcagtagctgcaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55178811 |
accggatcgctcaacacacaaatataataacaatcgacacagttcatctcaaattgagggccagagctataaaaatgttattagtttcagtagctgcaag |
55178712 |
T |
|
| Q |
401 |
tggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcagactcataacatcactgctgctaattagtactagtttac |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55178711 |
tggtttatctttgaggttctcaactcttgcacttgtcaattctcttcaggtcggactcataacatcactgctgctaattagtactagtttac |
55178620 |
T |
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