View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_high_5 (Length: 328)
Name: NF1906_high_5
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 14088087 - 14088403
Alignment:
| Q |
1 |
cctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14088087 |
cctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtc |
14088186 |
T |
|
| Q |
101 |
cagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14088187 |
cagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctct |
14088286 |
T |
|
| Q |
201 |
atcacatcccgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14088287 |
atcacatcccgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacaca |
14088386 |
T |
|
| Q |
301 |
tcagactcacaggttct |
317 |
Q |
| |
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||||||||||| ||||| |
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| T |
14088387 |
tcagactcacacgttct |
14088403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 33698608 - 33698292
Alignment:
| Q |
1 |
cctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698608 |
cctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtc |
33698509 |
T |
|
| Q |
101 |
cagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698508 |
cagacaatgttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctct |
33698409 |
T |
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| Q |
201 |
atcacatcccgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698408 |
atcacatcccgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacaca |
33698309 |
T |
|
| Q |
301 |
tcagactcacaggttct |
317 |
Q |
| |
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||||||||||| ||||| |
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| T |
33698308 |
tcagactcacacgttct |
33698292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 24876826 - 24877133
Alignment:
| Q |
10 |
aaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtccagacaatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
24876826 |
aaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatacctccacatgaatcaacatgttagaatattgagctagtccaaacaatg |
24876925 |
T |
|
| Q |
110 |
ttggaacttcccacctgacacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcc |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
24876926 |
ttggaacttcccacctgacagaaccttggttaacatgtcagctgggttctcattagtatgtacctttgcaagagaaatacgaccttcctctatgacatcc |
24877025 |
T |
|
| Q |
210 |
cgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacacatcagactca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877026 |
cgtacaaaatgataccttacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacacatcagactca |
24877125 |
T |
|
| Q |
310 |
caggttct |
317 |
Q |
| |
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|| ||||| |
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| T |
24877126 |
cacgttct |
24877133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 127 - 317
Target Start/End: Complemental strand, 9953568 - 9953379
Alignment:
| Q |
127 |
acacaaccttggttaacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgatacct |
226 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||| | ||||||||||||||||||||| |
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| T |
9953568 |
acacaaccttggt-aatatgtcagctgggttctcatcagtatgtacctttgtaagagaaatacgacctacctctatgaaatcccgtacaaaatgatacct |
9953470 |
T |
|
| Q |
227 |
tacatcgatatgcttggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacacatcagactcacaggttct |
317 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
9953469 |
tacatcgatatgcttggtctgagcatgatgaacctgattcttagccaagtgaatcacactttgactatcacacatcagactcacacgttct |
9953379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9955068 - 9954937
Alignment:
| Q |
1 |
cctcgttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9955068 |
cctcgttcataatttgaaaagaaacttcaaattttggacaaacaaattgcgtcttattatgcctccacacgaatcaacatgttagaatattgagcaagtc |
9954969 |
T |
|
| Q |
101 |
cagacaatgttggaacttcccacctgacacaa |
132 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
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|
| T |
9954968 |
cagacaatgttggaacttctcacctgacacaa |
9954937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 46458245 - 46458085
Alignment:
| Q |
141 |
aacatgtcagctgagttctcatcagtatgtaccttcgcaagagaaatacgaccttcctctatcacatcccgtacaaaatgataccttacatcgatatgct |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46458245 |
aacatgtcagctgggttctcatcagtatgtaccttcgtatgagaaatacgaccttcctctatgacatcccgtacaaaatgataccttacatcgatatgct |
46458146 |
T |
|
| Q |
241 |
tggtccgagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacacat |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46458145 |
tggtcggagcatgatgaacctgattcttagccaagtgaatcgcactttgactatcacacat |
46458085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 46461264 - 46461122
Alignment:
| Q |
5 |
gttcaaaatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgaatcaacatgttagaatattgagcaagtccaga |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46461264 |
gttcataatttgaaaagaaacttcaaattttggacgaacaaattgcgtcttattatgcctccacatgcatcaacatgttagaatattgagcaagtccaga |
46461165 |
T |
|
| Q |
105 |
caatgttggaacttcccacctgacacaaccttggttaacatgt |
147 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
46461164 |
caatgttggaacttcccacttgacacaaccttggttaacatgt |
46461122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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