View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_high_7 (Length: 261)
Name: NF1906_high_7
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 336755 - 336991
Alignment:
| Q |
11 |
cataggaccatggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggt |
110 |
Q |
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| T |
336755 |
cataggaccatggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggt |
336854 |
T |
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| Q |
111 |
gaaaggtttcgtgaaacgttccaaccttttggtttaggaattttcacaacagattcacatcaatggaaatacaataggaatcttctccgatatctcttca |
210 |
Q |
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| T |
336855 |
gaaaggtttcgtgaaacgttccaaccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttca |
336954 |
T |
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| Q |
211 |
aacaaagaagctttgaagcttttcaagagaaaatcat |
247 |
Q |
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| T |
336955 |
aacaaagaagctttgaagcttttcaagagaaaatcat |
336991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 340795 - 341023
Alignment:
| Q |
13 |
taggaccatggtttaccaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtga |
112 |
Q |
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||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
340795 |
taggaccatggtttaccggcatgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtga |
340894 |
T |
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| Q |
113 |
aaggtttcgtgaaacgttccaaccttttggtttaggaattttcacaacagattcacatcaatggaaatacaataggaatcttctccgatatctcttcaaa |
212 |
Q |
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| T |
340895 |
tttgtttcgtgaaatgtttgaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaa |
340994 |
T |
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| Q |
213 |
caaagaagctttgaagcttttcaagagaa |
241 |
Q |
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| T |
340995 |
caaagaagctttgaagcttttcaagagaa |
341023 |
T |
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