View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1906_low_12 (Length: 253)
Name: NF1906_low_12
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_12 |
 | |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 61 - 253
Target Start/End: Original strand, 14087691 - 14087881
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14087691 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatga |
14087790 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
14087791 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttattgtgata--tctaaattacaaaac |
14087881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 61 - 253
Target Start/End: Original strand, 14092223 - 14092413
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14092223 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatga |
14092322 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14092323 |
aaaaatgtctaaaaagaaagatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaaaac |
14092413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 46454263 - 46454073
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46454263 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatga |
46454164 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
46454163 |
aaaaatgtctaaaaagaaagatgaacttctaataaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaaaac |
46454073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 46461663 - 46461474
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46461663 |
tgttgagcagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatga |
46461564 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
46461563 |
-aaaatgtgtaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaaaac |
46461474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 33681945 - 33681758
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681945 |
tgttgagtagcagcggaaaatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
33681849 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33681848 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaaaac |
33681758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 33699002 - 33698815
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
33699002 |
tgttgagtagcagcggaaaatatagacttctaataata---tgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
33698906 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33698905 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaaaac |
33698815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 24880954 - 24881140
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24880954 |
tgttgagtagcagcgtaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatg- |
24881052 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24881053 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgata--tctaaattacaa |
24881140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 61 - 253
Target Start/End: Original strand, 24876452 - 24876641
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876452 |
tgttgagtagcagcggaaaatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatg- |
24876550 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
24876551 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctatttgttttgttgtgata--tctaaattacaaaac |
24876641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 24886289 - 24886392
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886289 |
tgttgagtagcagcggaaaatacagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
24886388 |
T |
|
| Q |
161 |
aaaa |
164 |
Q |
| |
|
|||| |
|
|
| T |
24886389 |
aaaa |
24886392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 61 - 253
Target Start/End: Complemental strand, 9955463 - 9955274
Alignment:
| Q |
61 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955463 |
tgttgagtagcagcggaaaatatagacttctaataataatatgaactatgtactcattaaagttgaacacgaatgtagctagaacaataaatttgtatga |
9955364 |
T |
|
| Q |
161 |
aaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactctacttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9955363 |
-aaaatgtctaagaagaaaggtgaacttctaattaataaattcactttgttacactctacttgtttttttgtgata--tctaaattacaaaac |
9955274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 9950416 - 9950286
Alignment:
| Q |
120 |
aagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactcta |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9950416 |
aagttgaacacgaatgtagttagaacaataaatttgtatgaaaaa-tgtctaagaagaaagatgaacttctaattaataaattcactatgttacactcta |
9950318 |
T |
|
| Q |
220 |
cttgttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
9950317 |
cttgttttgttgtgata--tctaaattacaaaac |
9950286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 253
Target Start/End: Original strand, 32213508 - 32213677
Alignment:
| Q |
85 |
gacttctaataataatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaag |
180 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
32213508 |
gacttctaataatgatatgaaatatgcacttactaaagctgaacacgaaataacttagctagaacaataaacttgtatgaaaa-atgtctaagaagaaag |
32213606 |
T |
|
| Q |
181 |
atgaacttctaattaataaattcactttgttacactctacttg-ttttgttgtgatatgtctaaattacaaaac |
253 |
Q |
| |
|
|| ||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| |||||| |||||||| |
|
|
| T |
32213607 |
ataaacttctaattaataaactcac-ttgttacactctatttgtttttgttgtgata--tctaaaatacaaaac |
32213677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 32213385 - 32213273
Alignment:
| Q |
98 |
aatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32213385 |
aatatgaaatatgcactcactaaagttgaacacgaaataacatagctagaacaataaacttgtatgaaaaa-tgtctaagaagaaaaatgaacttctaat |
32213287 |
T |
|
| Q |
194 |
taataaattcactt |
207 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
32213286 |
taataaactcactt |
32213273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 9360905 - 9361021
Alignment:
| Q |
93 |
ataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9360905 |
ataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatg-aaaaatgtctaagaagaaagatgaacttctaa |
9361003 |
T |
|
| Q |
193 |
ttaataaattcactttgt |
210 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9361004 |
ttaataaattcactttgt |
9361021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15047679 - 15047721
Alignment:
| Q |
18 |
gaaattgatggattccctgcaagggctatgctccttcagagtg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15047679 |
gaaattgatggattccctgcaagggctatgctccttcagagtg |
15047721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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