View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_13 (Length: 242)
Name: NF1906_low_13
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 38984522 - 38984671
Alignment:
| Q |
10 |
ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaaga |
109 |
Q |
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| T |
38984522 |
ttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatgtcttcttttgctcctgtgtaaaagggcttcagcaggtaaaaga |
38984620 |
T |
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| Q |
110 |
ataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
160 |
Q |
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| T |
38984621 |
ataataggttgcaacatgctaatagtacaatcacaattggaattcaaactc |
38984671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 10582949 - 10583134
Alignment:
| Q |
10 |
ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaaga |
109 |
Q |
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| T |
10582949 |
ttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatgtcttccttcgctcctgtgtaaaagggtttcagcag--aaaaaa |
10583046 |
T |
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| Q |
110 |
ataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagacatcgccaagta |
197 |
Q |
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| T |
10583047 |
agaataggctgcagcaatctaaaggtacaaacacaaatggcgttcaaactcattctaaaaaggaggttcccatagacatcaccaagta |
10583134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 356923 - 357020
Alignment:
| Q |
10 |
ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaaa |
107 |
Q |
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| T |
356923 |
ttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtcttccttcgctcctgtgtaaaagggtttcagaagaaaaaa |
357020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 6762618 - 6762518
Alignment:
| Q |
87 |
aaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagac |
186 |
Q |
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| T |
6762618 |
aaagggtttcagcaggaaaaagaagaataggttgcaacaagctaacggtacaaacacaaatggaatttgaactcgttctcagaaggaggttaccaaagac |
6762519 |
T |
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| Q |
187 |
a |
187 |
Q |
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| T |
6762518 |
a |
6762518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 16465554 - 16465650
Alignment:
| Q |
10 |
ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgtgtaaaagggtttcagcaggaaaa |
106 |
Q |
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| T |
16465554 |
ttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttggctagtaaatgtcctcttttgttcttgtataaaagggtttcagcaggaaaa |
16465650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 50249220 - 50249155
Alignment:
| Q |
10 |
ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttctttt |
75 |
Q |
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| T |
50249220 |
ttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtcttctttt |
50249155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 50248405 - 50248348
Alignment:
| Q |
103 |
aaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc |
160 |
Q |
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| T |
50248405 |
aaaaagaagtataggctgcaacaatctaacggtacaaatacaaatggaatttaaactc |
50248348 |
T |
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