View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_16 (Length: 216)
Name: NF1906_low_16
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 7235378 - 7235206
Alignment:
| Q |
26 |
tcacttcaaaggtaaaaatcgcttcaactacttcaaagtttcattcnnnnnnnnncttcttcaacaaaattcatcttccaaatgctatacac--taatca |
123 |
Q |
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| T |
7235378 |
tcacttcaaaggtaaaaatcgcttcaactacttcaaagtttcattctttttttt-cttcttcatcaaaattcatcttccaaatgctatacacactactca |
7235280 |
T |
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| Q |
124 |
ctacaccttcttttttcttcctttattacatcaattttcacactttcttattaacttcaaagtttgaatttttatct |
200 |
Q |
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| T |
7235279 |
ctacaccttcttttttcttcctttattacatcaattttcacactttc---ttaacttcaaagtttgaatttttatct |
7235206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 30641373 - 30641436
Alignment:
| Q |
134 |
ttttttcttcctttattacatcaattttcacactttcttattaacttcaaagtttgaatttttatct |
200 |
Q |
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| T |
30641373 |
ttttttcttcctttatcacatcaattttcacattttc---ttaacttcaaagtttgaatttttatct |
30641436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 45228892 - 45228955
Alignment:
| Q |
134 |
ttttttcttcctttattacatcaattttcacactttcttattaacttcaaagtttgaatttttatct |
200 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45228892 |
ttttttcttcctttaccacatcaattttcacactttc---ttaacttcaaagtttgaatttttatct |
45228955 |
T |
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