View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_18 (Length: 209)
Name: NF1906_low_18
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 1759971 - 1760136
Alignment:
| Q |
15 |
cagagagcggaagaggaagagagtaagaaagttggttcat-------ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaag |
107 |
Q |
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| T |
1759971 |
cagagagcggaagaggaagagagtaagaaagttggttcatcatctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaacaaag |
1760070 |
T |
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| Q |
108 |
agaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg |
173 |
Q |
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| T |
1760071 |
agaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttactacttcacagg |
1760136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 1738973 - 1739080
Alignment:
| Q |
55 |
ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagaga |
154 |
Q |
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| T |
1738973 |
ttttccaaataacaacaataaagggaaagatga------gaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaaggga |
1739066 |
T |
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| Q |
155 |
aaatttgctacttc |
168 |
Q |
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| T |
1739067 |
aaattttctacttc |
1739080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 1744360 - 1744426
Alignment:
| Q |
105 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
171 |
Q |
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| T |
1744360 |
aagagaaaaaaatggattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcaca |
1744426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 1724448 - 1724496
Alignment:
| Q |
125 |
aggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg |
173 |
Q |
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| T |
1724448 |
aggtctttttcatgcttattttgcaagagaaaattttctacttcacagg |
1724496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 2022788 - 2022851
Alignment:
| Q |
105 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttc |
168 |
Q |
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| T |
2022788 |
aagagaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttc |
2022851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 3157034 - 3156968
Alignment:
| Q |
105 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
171 |
Q |
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| T |
3157034 |
aagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcaca |
3156968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 3167250 - 3167302
Alignment:
| Q |
119 |
gattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
171 |
Q |
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| T |
3167250 |
gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcaca |
3167302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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