View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1906_low_2 (Length: 520)
Name: NF1906_low_2
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 48925526 - 48925056
Alignment:
| Q |
11 |
gtgagatgaaagaacttgggattggtccgaatgctcgaacgtatgatataatacttgttcacttgataaagggtggaagaaccaaagaagcttactcggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48925526 |
gtgagatgaaagaacttgggattggtccgaatgctcgaacgtatgatataatacttgttcacttgataaagggtggaagaaccaaagaagcttactcggt |
48925427 |
T |
|
| Q |
111 |
tttccagaggatgagtagtgagacggggtgtgagccgagtgtaagcacatatgcgatcatggtgaggatgttttgtaatgaaaaccaattggatatggca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48925426 |
tttccagaggatgagtagtgagacggggtgtgagccgagtgtaagcacatatgcgatcatggtgagaatgttttgtaatgaaaaccaattggatatggca |
48925327 |
T |
|
| Q |
211 |
atggtagtttggaatgagatgaaagacaagggaatccttccgggaattcacatgttctcgacattaataatttccttgtgtcatgaaaataagttggatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48925326 |
atggtagtttggaatgagatgaaagacaagggaatccttccgggaattcacatgttctcgacattaataatttccttgtgtcatgaaaataagttggatg |
48925227 |
T |
|
| Q |
311 |
atgcatgcagatactttcaacaaatgctggatgttggcattcggcctactgctaatatgttcagtgccttcaagagagctctaatggctgcgggaatgga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48925226 |
atgcatgcagatactttcaacaaatgctggatgttggcattcggcctactgctaatatgttcagtgccttcaagagagctctaatggctgcgggaatgga |
48925127 |
T |
|
| Q |
411 |
aaatactgtgatacattttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttacac |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48925126 |
aaatactgtgatacattttgcaaagaaagttgataaactgaggaatactccattaattgcttgacttacac |
48925056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University