View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_4 (Length: 484)
Name: NF1906_low_4
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Complemental strand, 40063821 - 40063372
Alignment:
| Q |
16 |
aaacacaaacaaataacccaacatagtcaatctaaacctaagtgaaacataacaaattagcaagggaacaggaattcagataaacaccttctttacaatt |
115 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40063821 |
aaacacaaacaaataacccaacatagttaatctaaacctaagtgaaacataacaaattagcaagggaacaagaattcagataaacaccttctttacaatt |
40063722 |
T |
|
| Q |
116 |
gacagcgctttattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgat |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40063721 |
gacagcgccttattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaaaagattacctgat |
40063622 |
T |
|
| Q |
216 |
tatgattaggacagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063621 |
tatgattaggacagttgagcaacagtgcaggccctacttttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgagaatcagatac |
40063522 |
T |
|
| Q |
316 |
atgtgcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttc |
415 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40063521 |
atgggcacacaaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttc |
40063422 |
T |
|
| Q |
416 |
aaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063421 |
aaaaacgatcgtggtacatggtatctgcgagatgggattaatgtctcagt |
40063372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 33 - 465
Target Start/End: Complemental strand, 40082154 - 40081722
Alignment:
| Q |
33 |
ccaacatagtcaatctaaacctaagtgaaacataacaaattagcaagggaacaggaattcagataaacaccttctttacaattgacagcgctttattgct |
132 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40082154 |
ccaacatagtcaatctaaaccaatgtgaaacataacaaattagtaagggaacaggagttcagataaacaccttctttacaattgacagcgccttattgct |
40082055 |
T |
|
| Q |
133 |
gctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttg |
232 |
Q |
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||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
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| T |
40082054 |
gctgcagcgtccgcggtagaagtttccacacgtccctaaaggtgttccatagcttgcaaatttgatggatgaaattacctgattatgattaggacaactg |
40081955 |
T |
|
| Q |
233 |
agcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaacttt |
332 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
40081954 |
agcaacagagcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgaacacacacttt |
40081855 |
T |
|
| Q |
333 |
ctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtac |
432 |
Q |
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| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40081854 |
ccagctgttttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtac |
40081755 |
T |
|
| Q |
433 |
atggtatctgcgagatgggattaatgtctcagt |
465 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||| |
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| T |
40081754 |
atggtatctgcaagatgcgattattgtctcagt |
40081722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 55 - 463
Target Start/End: Complemental strand, 40094414 - 40094006
Alignment:
| Q |
55 |
aagtgaaacataacaaattagcaagggaacaggaattcagataaacaccttctttacaattgacagcgctttattgctgctgcagcgtccgcggtagaag |
154 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40094414 |
aagtgaaccataacaaattagaaagggaacatgaatccagataaacaccttctttacaattgacagtgtcttattgctgctgcagcgtccgcggtagaag |
40094315 |
T |
|
| Q |
155 |
tttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
254 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094314 |
tttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
40094215 |
T |
|
| Q |
255 |
ttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaactttctagctgttttgtagcaaaagc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||| |
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| T |
40094214 |
ttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctatctgttttgtagcaaaaga |
40094115 |
T |
|
| Q |
355 |
tatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggatt |
454 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||| || ||||||||||||||||| |||| || ||||||||| |||||| |||| |
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| T |
40094114 |
tatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccatttggtttcaaaaacgactgtggcacgtggtatctgtgagatgagatt |
40094015 |
T |
|
| Q |
455 |
aatgtctca |
463 |
Q |
| |
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||||||||| |
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|
| T |
40094014 |
aatgtctca |
40094006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 404
Target Start/End: Original strand, 22012115 - 22012393
Alignment:
| Q |
126 |
tattgctgctgcagcgtccgcggtagaagtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattagg |
225 |
Q |
| |
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||||||||||||||| |||| ||| | ||||||| || ||||| | || |||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |
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| T |
22012115 |
tattgctgctgcagcttccgtggttgtagtttccacaagtcccacgaggcgttccaaagcttgcaaatttaatggaagagatcgcctgattaggataagg |
22012214 |
T |
|
| Q |
226 |
acagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacac |
325 |
Q |
| |
|
|| | || ||||| |||| ||||| |||| ||||||||| || ||||| ||||| | || |||||||| |||| |||||||| |||| |
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| T |
22012215 |
gcattccagtgacagtacaggacctacctttctttctgattctgcattcgaattccatgtgtctacaggtggagggtgagattcagttacatgtgaacac |
22012314 |
T |
|
| Q |
326 |
aaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgc |
404 |
Q |
| |
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| |||||||| |||||||||| |||||| ||||| ||| || || || || ||||||||||||||| || |||||||| |
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| T |
22012315 |
acactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaagtgttgc |
22012393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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