View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1906_low_5 (Length: 431)

Name: NF1906_low_5
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1906_low_5
NF1906_low_5
[»] chr2 (16 HSPs)
chr2 (22-415)||(89667-90059)
chr2 (104-415)||(19678403-19678712)
chr2 (111-415)||(45276926-45277230)
chr2 (122-415)||(7879794-7880087)
chr2 (111-415)||(2565973-2566275)
chr2 (119-415)||(18780605-18780899)
chr2 (110-415)||(29303543-29303844)
chr2 (111-411)||(6271037-6271330)
chr2 (266-374)||(31548766-31548874)
chr2 (316-374)||(44322176-44322234)
chr2 (266-343)||(6883758-6883835)
chr2 (331-374)||(27861790-27861833)
chr2 (316-374)||(6221478-6221536)
chr2 (316-374)||(33015147-33015205)
chr2 (316-374)||(44313997-44314055)
chr2 (266-323)||(38565971-38566028)
[»] chr5 (17 HSPs)
chr5 (111-415)||(14651166-14651468)
chr5 (113-411)||(38491417-38491716)
chr5 (111-415)||(7850681-7850978)
chr5 (269-374)||(29150689-29150794)
chr5 (279-375)||(5120417-5120513)
chr5 (266-377)||(43170925-43171036)
chr5 (269-374)||(13820518-13820623)
chr5 (316-374)||(18889160-18889218)
chr5 (269-374)||(5578515-5578620)
chr5 (269-374)||(13490482-13490587)
chr5 (266-319)||(21491705-21491758)
chr5 (269-372)||(13825865-13825966)
chr5 (270-374)||(39537307-39537411)
chr5 (316-374)||(2677056-2677114)
chr5 (316-374)||(23962942-23963000)
chr5 (266-344)||(37135207-37135285)
chr5 (35-110)||(41951652-41951729)
[»] chr6 (17 HSPs)
chr6 (111-415)||(14678103-14678407)
chr6 (114-415)||(33516053-33516354)
chr6 (279-373)||(13758502-13758596)
chr6 (269-377)||(15603684-15603792)
chr6 (269-344)||(15060265-15060340)
chr6 (269-374)||(18675445-18675550)
chr6 (297-341)||(12269527-12269571)
chr6 (316-374)||(22012070-22012128)
chr6 (266-327)||(22525010-22525071)
chr6 (305-377)||(1831228-1831300)
chr6 (270-374)||(20990531-20990635)
chr6 (279-370)||(26817715-26817806)
chr6 (316-374)||(1603461-1603519)
chr6 (316-374)||(34043636-34043694)
chr6 (269-370)||(1423051-1423152)
chr6 (266-319)||(4064847-4064900)
chr6 (266-303)||(31474264-31474301)
[»] chr7 (22 HSPs)
chr7 (111-415)||(19311379-19311670)
chr7 (111-415)||(8069949-8070251)
chr7 (119-415)||(48238825-48239120)
chr7 (111-415)||(6188831-6189131)
chr7 (111-415)||(6195347-6195647)
chr7 (110-412)||(48637072-48637360)
chr7 (270-368)||(135756-135854)
chr7 (266-375)||(14574176-14574285)
chr7 (266-375)||(21863950-21864059)
chr7 (266-368)||(30082142-30082244)
chr7 (305-373)||(23305736-23305804)
chr7 (279-374)||(18667460-18667555)
chr7 (316-374)||(4539953-4540011)
chr7 (279-377)||(24441578-24441676)
chr7 (279-375)||(39038164-39038257)
chr7 (266-319)||(15995395-15995448)
chr7 (110-222)||(30081982-30082096)
chr7 (270-374)||(13754207-13754311)
chr7 (144-222)||(135904-135982)
chr7 (267-377)||(8113410-8113519)
chr7 (266-307)||(12380188-12380229)
chr7 (111-211)||(23305904-23306002)
[»] chr3 (14 HSPs)
chr3 (110-415)||(31884381-31884684)
chr3 (111-415)||(6024178-6024480)
chr3 (111-411)||(23044327-23044620)
chr3 (268-366)||(6584073-6584171)
chr3 (279-371)||(33100347-33100439)
chr3 (266-377)||(47185439-47185550)
chr3 (268-377)||(44879908-44880017)
chr3 (270-374)||(52448235-52448339)
chr3 (316-374)||(10994103-10994161)
chr3 (316-374)||(19157185-19157243)
chr3 (316-374)||(27941470-27941528)
chr3 (266-319)||(9467144-9467197)
chr3 (266-303)||(22918066-22918103)
chr3 (266-303)||(36641630-36641667)
[»] chr4 (17 HSPs)
chr4 (111-415)||(28142872-28143175)
chr4 (111-415)||(14191738-14192040)
chr4 (111-415)||(51338018-51338314)
chr4 (269-374)||(31915560-31915665)
chr4 (279-375)||(10142608-10142704)
chr4 (307-374)||(52460633-52460700)
chr4 (33-76)||(55851911-55851954)
chr4 (269-342)||(3665055-3665128)
chr4 (266-342)||(25201790-25201866)
chr4 (331-374)||(52459376-52459419)
chr4 (316-374)||(7413698-7413756)
chr4 (316-374)||(7459779-7459837)
chr4 (316-374)||(10094976-10095034)
chr4 (279-369)||(24611006-24611094)
chr4 (316-374)||(28803848-28803906)
chr4 (266-377)||(13957711-13957820)
chr4 (334-378)||(42511313-42511357)
[»] scaffold0743 (1 HSPs)
scaffold0743 (119-415)||(2240-2536)
[»] chr8 (12 HSPs)
chr8 (111-415)||(6926981-6927285)
chr8 (111-415)||(28516834-28517138)
chr8 (111-415)||(11994156-11994442)
chr8 (114-415)||(2878632-2878932)
chr8 (310-415)||(28509627-28509732)
chr8 (270-367)||(2807593-2807690)
chr8 (279-377)||(9381757-9381855)
chr8 (266-377)||(11648016-11648127)
chr8 (270-370)||(16729826-16729926)
chr8 (331-374)||(1981688-1981731)
chr8 (316-374)||(45117558-45117616)
chr8 (266-314)||(24683281-24683329)
[»] chr1 (16 HSPs)
chr1 (111-415)||(28945236-28945539)
chr1 (110-415)||(26222062-26222365)
chr1 (119-415)||(36297069-36297358)
chr1 (111-412)||(42722607-42722894)
chr1 (269-374)||(44310740-44310845)
chr1 (31-110)||(20226739-20226818)
chr1 (269-374)||(17967230-17967336)
chr1 (36-110)||(18705630-18705706)
chr1 (316-374)||(5049547-5049605)
chr1 (316-374)||(21906471-21906529)
chr1 (316-374)||(22070595-22070653)
chr1 (316-373)||(48596306-48596363)
chr1 (27-110)||(9908095-9908179)
chr1 (270-378)||(12028218-12028326)
chr1 (266-342)||(42055719-42055795)
chr1 (334-378)||(49228288-49228332)
[»] scaffold0385 (1 HSPs)
scaffold0385 (279-369)||(1065-1155)
[»] scaffold1364 (1 HSPs)
scaffold1364 (266-375)||(1198-1307)
[»] scaffold1266 (1 HSPs)
scaffold1266 (266-375)||(1664-1773)
[»] scaffold0263 (1 HSPs)
scaffold0263 (266-375)||(18245-18354)
[»] scaffold0065 (1 HSPs)
scaffold0065 (266-319)||(66682-66735)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 89667 - 90059
Alignment:
Q  22 tcaagaaaatgaagatgagaaaattggattttctctaaaaagtgcagcggaaaatccttcaaagcgggtaccaaattagttctgatacccagggccattc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||    
T  89667 tcaagaaaatgaagatgagaaaattggattttctctaaaaagtgcagcggaagatccttcaaagcgggtaccaaattagttctgatacccatggccgttc 89766  T
Q  122 ctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgcttc 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  89767 ctagtgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatacatcaaaacattttttagtttcttgttatgattttactaacgcttc 89866  T
Q  222 annnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaata 321  Q
    |        |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  89867 attttttttcttcgcttttcactataggataaaagg-tttttttaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaata 89965  T
Q  322 ccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  89966 ccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacagtgaatttgtgacatctaatgatagtaa 90059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 104 - 415
Target Start/End: Complemental strand, 19678712 - 19678403
Alignment:
Q  104 tgatacccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgtta 203  Q
    ||||| |||||||| || ||||||||| |||||| |||| ||||||||||||||||| |||||||  |||| ||||| ||| ||||||||||||||||||    
T  19678712 tgataaccagggccgtttctagcgtttaaggggccttaggcatagtttgaaaaaatgagcccttacataatacatcataac-ttttttagtttcttgtta 19678614  T
Q  204 tgattttactaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccataga 301  Q
    |||||||||||||||||||          ||||||||||||||||| ||||||||         || ||||||||| |||||||||||||||||||||||    
T  19678613 tgattttactaacgcttcatttttttttccttcgcttttcactataagataaaag---ttttttagacaacatcttcaaataaatcaaatactccataga 19678517  T
Q  302 aatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgaca 401  Q
    || |||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||| ||||||| |||||    
T  19678516 aaccaaaactaaacaaaataccataggattagagaacaatagcttctccgaagcaaactgaaattttagcacctaaatagtagacactgaatttttgaca 19678417  T
Q  402 tctaatgatagtaa 415  Q
    ||||||||||||||    
T  19678416 tctaatgatagtaa 19678403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 45276926 - 45277230
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  ||||  |||| ||  |||||||||||||||||||||||||    
T  45276926 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgatttt 45277025  T
Q  211 actaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||| ||          ||||||||||||||||| ||||||||         || ||||||||| |||||||||||||||| |||||||| ||||    
T  45277026 actaacgctacatttttcttttcttcgcttttcactataagataaaag--cttttttagacaacatcttcaaataaatcaaatacttcatagaaaccaaa 45277123  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  45277124 actaaacaaaatactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatg 45277223  T
Q  409 atagtaa 415  Q
    |||||||    
T  45277224 atagtaa 45277230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 122 - 415
Target Start/End: Original strand, 7879794 - 7880087
Alignment:
Q  122 ctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgcttc 221  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||||  ||||  |||| ||  |||||||||||||||||||||||||||||||||| |    
T  7879794 ctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgattttactaacgctac 7879893  T
Q  222 annnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    |          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  7879894 atttttcttttcttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatacttcatagaaaccaaaactaaacaaaa 7879991  T
Q  320 taccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  7879992 tactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatgatagtaa 7880087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 2566275 - 2565973
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| | |||| |||| |||||||||||||||||| ||||||  ||||  |||| || |||||||||||| |||||||||||||    
T  2566275 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaaatggacccttacataatatatcataaacttttttagttttttgttatgatttt 2566176  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    |||||| ||| |        ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||||||||||||| ||||||    
T  2566175 actaacacttaattttttttcttcgcttttcactataagataaaaggttttct--aggcaacatcttcaaataaatcaaatactccatagaaaccaaaac 2566078  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| || |||||||||||||||| |||||| |||||| ||||||| ||||||||||||||    
T  2566077 taaacaacataccataggattagagaacaattgcttctgcgaaataaactgaaattttagcacttaaataatagacactgaatttttgacatctaatgat 2565978  T
Q  411 agtaa 415  Q
    |||||    
T  2565977 agtaa 2565973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 119 - 415
Target Start/End: Original strand, 18780605 - 18780899
Alignment:
Q  119 ttcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgc 218  Q
    |||||||||||| | |||| |||| |||||||||||||||||||||||||  ||||  |||| || |||||||||||| ||||||||||||||||||| |    
T  18780605 ttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataaacttttttagttttttgttatgattttactaacac 18780704  T
Q  219 ttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaa 318  Q
    || |        ||||||||||||||||| |||||||||        |||||||||||| |||||||||||||||||| ||||||||||||||||||||     
T  18780705 ttaattttttttcttcgcttttcactataagataaaaggttttct--aggcaacatcttcaaataaatcaaatactccttagaaatcaaaactaaacaat 18780802  T
Q  319 ataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    ||||||||||||||||||||||| |||| |||||| || |||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||    
T  18780803 ataccataggattagagaacaattgcttctgcgaaataaactgaaattttagcacttaaatattagacactgaatttttgacatctaatgatagtaa 18780899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 110 - 415
Target Start/End: Complemental strand, 29303844 - 29303543
Alignment:
Q  110 ccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattt 209  Q
    |||||||| |||||||||||| |||||| |||| |||||||||| |||| |||||||||  |||| ||||| ||| ||||||||||||||||||||||||    
T  29303844 ccagggccgttcctagcgtttaaggggccttaggcatagtttgacaaaa-gggcccttacataatacatcataac-ttttttagtttcttgttatgattt 29303747  T
Q  210 tactaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaa 307  Q
    || ||||||||||          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||| |||||||||||| |||    
T  29303746 ta-taacgcttcattttttttttcttcgcttttcactatacgataaaag--cttttttaggcaacatcttcaaataaatcaaaaactccatagaaaccaa 29303650  T
Q  308 aactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||    
T  29303649 aactaaacaaaataccataggattagagaacaatagcttatccgaagtagactgaaattttaacacctaaatagtagacactgaattt-tgagatctaat 29303551  T
Q  408 gatagtaa 415  Q
    ||||||||    
T  29303550 gatagtaa 29303543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 6271037 - 6271330
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| || |||| |||| |||||| |||| ||||||| |||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||    
T  6271037 cagggccgtttctagtgtttaaggggccttaggcatagttcgaaaaaatgggcccttatataatacatcataaacttttttagtttcttgttatgatttt 6271136  T
Q  211 actaacgcttca--nnnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||||||||||| ||||    
T  6271137 actaacgcttcattttcttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactccatagaaaccaaa 6271234  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    ||||||||||  || | |  | |     |||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  6271235 actaaacaaa--actaaacaaat-----acaatagcttctccgaagtagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatg 6271327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 31548766 - 31548874
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    ||||||||| |  ||||||||||||||||  ||| | | |||||| ||| |||||| ||||| | ||||||||||||||   ||||||||||||||||||    
T  31548766 aggcaacatatgaaaataaatcaaatactttataaacaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaat 31548865  T
Q  366 tttagcacc 374  Q
    |||| ||||    
T  31548866 tttaccacc 31548874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 44322176 - 44322234
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| |||||| |||| ||||||||||||||||||||||||    
T  44322176 aaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattttagcacc 44322234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 6883835 - 6883758
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatag 343  Q
    |||||||||||  ||||||||||||||||||||||| | |||||| ||| || ||| | ||| | |||||||||||||    
T  6883835 aggcaacatctgaaaataaatcaaatactccatagacaccaaaacaaaataagatatcgtagaagtagagaacaatag 6883758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 27861790 - 27861833
Alignment:
Q  331 tagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||    
T  27861790 tagagaaaaatagcacatgcgaagtagactgaaattttagcacc 27861833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 6221536 - 6221478
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  6221536 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 6221478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 33015147 - 33015205
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  33015147 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 33015205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 44313997 - 44314055
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  44313997 aaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattttagcacc 44314055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 38565971 - 38566028
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaatacc 323  Q
    |||||||||||  ||||||||||||||||  ||||| | |||||| ||||||||||||    
T  38565971 aggcaacatctgaaaataaatcaaatactttatagacaccaaaacaaaacaaaatacc 38566028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 14651166 - 14651468
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| ||| | |||||| ||| ||||||||| |||||||||||||||||||||||||    
T  14651166 cagggccgtttctagcgtttcaggggctttagacatagtttgaaaaa-tggactcttatgcaatacatcaaaacattttttagtttcttgttatgatttt 14651264  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    ||||||||||||        |||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||| ||||||||||    
T  14651265 actaacgcttcattttttttcttcgcttttcactataggataaaaggttttttt-aggcaacatctttaaataaatcaaataatccatataaatcaaaac 14651363  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14651364 taaacaaaataccataggattagagaacaatagcttatgcaaagtagactgaaattttagcacctaaatagtagacagtgaatttgtgacatctaatgat 14651463  T
Q  411 agtaa 415  Q
    |||||    
T  14651464 agtaa 14651468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 113 - 411
Target Start/End: Complemental strand, 38491716 - 38491417
Alignment:
Q  113 gggccattcctagcgtttcaggggctttagacatagtttgaaaaaa-tgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttta 211  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||| ||||||||||  ||||  |||| ||  ||||||||||||||||||||||||||    
T  38491716 gggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgatttta 38491617  T
Q  212 ctaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    |||||||| ||          ||||||||||||||||| ||||||||         ||| |||||||| |||||||||||||||| |||||||| |||||    
T  38491616 ctaacgctacatttttcttttcttcgcttttcactataagataaaag--cttttttaggtaacatcttcaaataaatcaaatacttcatagaaaccaaaa 38491519  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  38491518 ctaaacaaaatactataggattagagaacaatagcttcttcgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatga 38491419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 7850978 - 7850681
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||| |||| |||||| |||| ||||||| |||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||    
T  7850978 cagggccgttcctagtgtttaaggggccttaggcatagttcgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgatttt 7850879  T
Q  211 actaacgcttca--nnnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          ||||||||||||||||| ||||| ||         |||||||||||| |||||||||| |||||||||||||| ||||    
T  7850878 actaacgcttcattttcttttccttcgcttttcactataagataacag--cttttttaggcaacatcttcaaataaatcatatactccatagaaaccaaa 7850781  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||    | | |||      |||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  7850780 actaaacaaaactaaaca-gat------acaatagcttctccgaagtagactgaaattttagcacctaaataatagacactgaatttttgacatctaatg 7850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 29150794 - 29150689
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||||||||||| |||||| | |||||| ||| |||||||| ||  | |||||| ||||| |   |||||||||||||||||||||    
T  29150794 caacatctaaaaataaatcaaatacttcatagataccaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaatttt 29150695  T
Q  369 agcacc 374  Q
    ||||||    
T  29150694 agcacc 29150689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 5120417 - 5120513
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacct 375  Q
    ||||||||| ||||||||||| | | |||||| ||| |||||||| ||| | || ||||||||||| ||| | |||||||||||||||||| |||||    
T  5120417 aaataaatccaatactccataaacaccaaaacaaaataaaataccgtagaagtatagaacaatagcatatacaaagtagactgaaattttaacacct 5120513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 43170925 - 43171036
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||  |||||||||||||||||  |||| | |||||| ||| |||||| | ||| |  |  ||||||||||  ||||||||||||||| |||    
T  43170925 aggcaacatctgaaaataaatcaaatactctttagacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaat 43171024  T
Q  366 tttagcacctaa 377  Q
    ||||||||||||    
T  43171025 tttagcacctaa 43171036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 13820518 - 13820623
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  ||| |||||||||||  |||||| | |||||| ||| |||||||| ||| | |||||||||| | |  ||| ||||||||||||||||||    
T  13820518 caacatctgaaaacaaatcaaatacctcatagacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaatttt 13820617  T
Q  369 agcacc 374  Q
    ||||||    
T  13820618 agcacc 13820623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 18889218 - 18889160
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| |||| || ||||||||||||||||||||||||||||    
T  18889218 aaaataccgtagaagtagagaaaaataactcatgcgaagtagactgaaattttagcacc 18889160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 5578515 - 5578620
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||| |||||||| ||  | | |||||| ||| |||||| | ||  | ||||||| |||||| ||||| |||||||||||||||||    
T  5578515 caacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaatttt 5578614  T
Q  369 agcacc 374  Q
    ||||||    
T  5578615 agcacc 5578620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 13490587 - 13490482
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||| |||||||| ||| | | |||||| ||| |||||  | ||| | || |||| ||||||  ||||||||||||||||||||||    
T  13490587 caacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaatttt 13490488  T
Q  369 agcacc 374  Q
    ||||||    
T  13490487 agcacc 13490482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 21491705 - 21491758
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    ||||||||| || ||||||||||||||||| ||||||| |||||| ||||||||    
T  21491705 aggcaacattttaaaataaatcaaatactcaatagaaaccaaaacaaaacaaaa 21491758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 13825865 - 13825966
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||||||||||| || | | |  ||||| |||||||||||| ||  | |||||||||||| |  |||| |||||||||||||||||    
T  13825865 caacatctaaaaataaatcaaatactacagacaca--aaaacaaaacaaaataccgtaaaagtagagaacaataacacatgcaaagtagactgaaatttt 13825962  T
Q  369 agca 372  Q
    ||||    
T  13825963 agca 13825966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 39537307 - 39537411
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  |||||||| ||||| || ||| | | |||||| ||| |||||| | ||| | ||||||| ||||||  |||||||||| ||||||||||||    
T  39537307 aacatctgaaaataaattaaatattctatatacaccaaaacaaaataaaatatcttagaagtagagaaaaatagcacatgcgaagtaaactgaaatttta 39537406  T
Q  370 gcacc 374  Q
    |||||    
T  39537407 gcacc 39537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 2677114 - 2677056
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  2677114 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 2677056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 23963000 - 23962942
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  23963000 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 23962942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 37135285 - 37135207
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagc 344  Q
    ||||||| |||  ||||||||||||||||||||||| | |||||| | | |||||| | ||| | ||||||||||||||    
T  37135285 aggcaacgtctgaaaataaatcaaatactccatagacaccaaaacaacataaaatatcttagaagtagagaacaatagc 37135207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 41951652 - 41951729
Alignment:
Q  35 gatgagaaaattggattttctctaaaaagtgcagcggaaa--atccttcaaagcgggtaccaaattagttctgatacc 110  Q
    |||||||||||| ||||||||| | ||| |||||||||||  ||||||||| |||| ||||| ||||| ||| |||||    
T  41951652 gatgagaaaattagattttctcgagaaaatgcagcggaaaatatccttcaaggcggataccagattagctctaatacc 41951729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 14678407 - 14678103
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||  |||| |||||||||||||||||||||||| ||||||||||    
T  14678407 cagggccgttcctagcgtttcaggggccttagatatagtttaaaaaaatggacccttacataatacatcaaaaccttttttagtttctttttatgatttt 14678308  T
Q  211 actaacgcttcannnnnnnn-cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    ||||||||||||         |||| |||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  14678307 actaacgcttcatttttttttcttcacttttcactataagataaaaggttttctt-aggcaacatctttaaataaatcaaatactccatagaaatcaaaa 14678209  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  14678208 ctaaacaaaataccataagattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtaggcagtgaatttgtgacatctaatga 14678109  T
Q  410 tagtaa 415  Q
    ||||||    
T  14678108 tagtaa 14678103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 114 - 415
Target Start/End: Original strand, 33516053 - 33516354
Alignment:
Q  114 ggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttact 213  Q
    |||| |||||| ||||| |||||| |||| |||||||||||||||||||||||||  ||||  |||| ||  ||||||||||||||||||||||||||||    
T  33516053 ggccgttcctaacgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgattttact 33516152  T
Q  214 aacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaact 311  Q
    ||||||  |          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||||||| |||||||| |||||||    
T  33516153 aacgctatatttttcttttcttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatacttcatagaaaccaaaact 33516250  T
Q  312 aaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgata 411  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  33516251 aaacaaaatactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatgata 33516350  T
Q  412 gtaa 415  Q
    ||||    
T  33516351 gtaa 33516354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 13758502 - 13758596
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcac 373  Q
    ||||||||||||||||| ||||| | ||||||  || |||||||| ||| | ||||||||||||||  ||| |||||||||| ||||||||||||    
T  13758502 aaataaatcaaatactctatagacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagactaaaattttagcac 13758596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 15603684 - 15603792
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||||||||||| |||| | || ||||| ||| |||||| ||||| | ||||||||||||||   ||| ||||| | |||||||||    
T  15603684 caacatctgaaaataaatcaaatacttcataaacattaaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaatttt 15603783  T
Q  369 agcacctaa 377  Q
    |||||||||    
T  15603784 agcacctaa 15603792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 15060340 - 15060265
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagc 344  Q
    ||||||||  ||||||||||||||||| ||||| | |||||| ||| |||||||||||| | ||||||||||||||    
T  15060340 caacatctgaaaataaatcaaatactctatagacaccaaaacaaaataaaataccatagaagtagagaacaatagc 15060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 18675550 - 18675445
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||| |||||||| ||| | | |||||| ||| |||||| |  |||| ||||||| |||| |  ||||||||||||||||||||||    
T  18675550 caacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaatttt 18675451  T
Q  369 agcacc 374  Q
    ||||||    
T  18675450 agcacc 18675445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 12269571 - 12269527
Alignment:
Q  297 atagaaatcaaaactaaacaaaataccataggattagagaacaat 341  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  12269571 atagaaatcaaaactaaacaaaataccatagaataagagaacaat 12269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 22012070 - 22012128
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| |||||| |||| ||||||||||||||||||||||||    
T  22012070 aaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattttagcacc 22012128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 22525071 - 22525010
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccatag 327  Q
    |||||||||||  ||||||||||||||||  ||||| |||||||| ||| ||||||||||||    
T  22525071 aggcaacatctgaaaataaatcaaatactttatagacatcaaaacaaaataaaataccatag 22525010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 1831300 - 1831228
Alignment:
Q  305 caaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaa 377  Q
    |||||| ||| ||||||||  || | |||||||||||| | | ||||||||||||||||||||||||| ||||    
T  1831300 caaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaa 1831228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 20990635 - 20990531
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  |||||||| |||||||| ||| | | |||||| |||  ||||| | ||  | ||||||| ||||||  |||||||||||||||||||||||    
T  20990635 aacatctgaaaataaattaaatactctatatacaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaatttta 20990536  T
Q  370 gcacc 374  Q
    |||||    
T  20990535 gcacc 20990531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 370
Target Start/End: Complemental strand, 26817806 - 26817715
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttag 370  Q
    ||||||||||||||||  ||||| |   |||| ||| |||||| | ||| | ||||||||||||||  |||||||||||| |||||||||||    
T  26817806 aaataaatcaaatactgtatagacactcaaacaaaataaaatatcgtagaagtagagaacaatagcacatgcgaagtagagtgaaattttag 26817715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 1603519 - 1603461
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  1603519 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 1603461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 34043694 - 34043636
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  34043694 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 34043636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 1423152 - 1423051
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  |||||||| |||||||| ||| | | |||||| ||| |||||| | ||||| ||||||| |||| |  ||| ||| ||||||||||||||    
T  1423152 caacatctgaaaataaattaaatactctatatacaccaaaacaaaataaaatatcgtaggagtagagaaaaataacacatgagaactagactgaaatttt 1423053  T
Q  369 ag 370  Q
    ||    
T  1423052 ag 1423051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 4064847 - 4064900
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    |||||||||| | ||||||||||||||||| ||||||| | |||| ||||||||    
T  4064847 aggcaacatcgtaaaataaatcaaatactcaatagaaaccgaaacaaaacaaaa 4064900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 31474264 - 31474301
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaa 303  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  31474264 aggcaacatctttaaataaatcagatactcaatagaaa 31474301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 19311379 - 19311670
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  19311379 cagggccgttcctagcgtttcaggggccttagacatagtttgaaaaaatgggccctta-------------aaccttttttagtttcttgttatgatttt 19311465  T
Q  211 actaacgcttcannnnnnnn-cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    ||||||||||||         |||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||    
T  19311466 actaacgcttcatttttttttcttcgcttttcactataggataaaaggttttttt-aggcaatatctttaaataaatcaaatactccatagaaatcaaaa 19311564  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19311565 ctaaacaaaataccataggaatagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacagtgaatttgtgacatctaatga 19311664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 8070251 - 8069949
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  8070251 cagggccattcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataac-ttttttagtttcttgttatgatttt 8070153  T
Q  211 actaacgcttcannnnnnnn-cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    ||||||||||||         ||||||||||||| ||| ||||||||         |||||||||||| ||||||||||||||||||||||||| |||||    
T  8070152 actaacgcttcattttcttttcttcgcttttcaccataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactccatagaaaccaaaa 8070055  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8070054 ctaaataaaataccataggattagagaacaatagcttctccgaagtaaactgaaattttagcacctaaatagtagacactgaatttttgacatctaatga 8069955  T
Q  410 tagtaa 415  Q
    ||||||    
T  8069954 tagtaa 8069949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 119 - 415
Target Start/End: Complemental strand, 48239120 - 48238825
Alignment:
Q  119 ttcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgc 218  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  48239120 ttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgattttactaacgc 48239021  T
Q  219 ttcannnnnnnnc-ttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaa 317  Q
    ||||        | || ||||||||||||| ||||||||         |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  48239020 ttcattttttttccttggcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactccatagaaaccaaaactaaacaa 48238923  T
Q  318 aataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  48238922 aatatcataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagttgacactgaatttttgacatctaatgatagtaa 48238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 6188831 - 6189131
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  6188831 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataac-ttttttagtttcttgttatgatttt 6188929  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    ||||||||||||        ||||||||||||||||| ||||||||         |||||||||||| ||||||||||||||||| ||||||| ||||||    
T  6188930 actaacgcttcattttttt-cttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaaac 6189026  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||| | |||| ||||||| ||||||||||||||    
T  6189027 taaacaaaataccataggattagagaacaacagcttctccgaagtaaactgaaattttagcacctaaataatcgacactgaatttttgacatctaatgat 6189126  T
Q  411 agtaa 415  Q
    |||||    
T  6189127 agtaa 6189131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 6195347 - 6195647
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  6195347 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataac-ttttttagtttcttgttatgatttt 6195445  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    ||||||||||||        ||||||||||||||||| ||||||||         |||||||||||| ||||||||||||||||| ||||||| ||||||    
T  6195446 actaacgcttcattttttt-cttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaaac 6195542  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    |||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||| | |||| ||||||| ||||||||||||||    
T  6195543 taaacaaaataccataggattagagaacaacagcttctccgaagtaaactgaaattttagcacctaaataatcgacactgaatttttgacatctaatgat 6195642  T
Q  411 agtaa 415  Q
    |||||    
T  6195643 agtaa 6195647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 110 - 412
Target Start/End: Complemental strand, 48637360 - 48637072
Alignment:
Q  110 ccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattt 209  Q
    |||||||| ||||||| |||| |||||| |||| ||||||| |||||||||||||||||  |||| ||||| || |||||||||||||||||||||||||    
T  48637360 ccagggccgttcctagtgtttaaggggccttaggcatagttcgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgattt 48637261  T
Q  210 tactaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    ||||||||||           |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||| ||||||| |||||    
T  48637260 tactaacgct-----cttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaaa 48637168  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||||||||    | | |||      |||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  48637167 ctaaacaaaactaaaca-gat------acaatagcttctccgaagtagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatga 48637075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 135854 - 135756
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    |||||||| |||||||| |||||||||||||||| |||||| ||||||||||| |||  ||||||||||||| |||  || ||||||||||||||||||    
T  135854 aacatcttcaaataaattaaatactccatagaaaccaaaacaaaacaaaatacgatacaattagagaacaattgctcctgtgaagtagactgaaatttt 135756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 14574285 - 14574176
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| |||||||| | |  || |  | ||||||||||   |||||||||||||||||||    
T  14574285 aggcaacatcttaaaataaatcaaatactcaatagaaatcaaaacaaaacaaaaaatcgcagaagcatagaacaatagaacatgcgaagtagactgaaat 14574186  T
Q  366 tttagcacct 375  Q
    ||||||||||    
T  14574185 tttagcacct 14574176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 21864059 - 21863950
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||  |||||||| |||||||||||| | | |||||| ||| |||||||| ||| | ||||||||||||||   ||||||||||| ||||||    
T  21864059 aggcaacatctcaaaataaattaaatactccataaacaacaaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaat 21863960  T
Q  366 tttagcacct 375  Q
    ||||||||||    
T  21863959 tttagcacct 21863950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 30082142 - 30082244
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||| |||||||| |||||||   |||| | ||||||||||||||||| ||||| |||||||||||||  ||  | ||||||||||| ||||    
T  30082142 aggcaacatcttcaaataaattaaatacttagtagagaccaaaactaaacaaaatatcatagaattagagaacaatttctcctacgaagtagactcaaat 30082241  T
Q  366 ttt 368  Q
    |||    
T  30082242 ttt 30082244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 23305804 - 23305736
Alignment:
Q  305 caaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcac 373  Q
    |||||| ||||||||| |||||  |||||||||||||| ||  || |||||||||||||||||||||||    
T  23305804 caaaacaaaacaaaatgccataaaattagagaacaataactcctgagaagtagactgaaattttagcac 23305736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 18667555 - 18667460
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| |||||||| ||| | |||||||| |||  ||||| | ||  | ||||||| ||||||  ||||||||||||||||||||||||||||    
T  18667555 aaataaattaaatactctatatacatcaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattttagcacc 18667460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 4540011 - 4539953
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||||||||||||||||||||||||||||    
T  4540011 aaaataccgtagaagtagagaaaaatagcacatgcgaagtagactgaaattttagcacc 4539953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 24441578 - 24441676
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaa 377  Q
    |||||||||||||||| |||||||| |||||   || |||||| ||||| | || |||||||||||  |||  |||||||||||||| ||| |||||||    
T  24441578 aaataaatcaaatacttcatagaaaccaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaa 24441676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 39038164 - 39038257
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacct 375  Q
    ||||| |||||||||| || ||| |||||||| ||| |||||||| |||   ||||||||||||||   | |||||| |||||||||||||||||||    
T  39038164 aaatacatcaaatacttcacagacatcaaaacaaaataaaataccgtag---tagagaacaatagcacttacgaagttgactgaaattttagcacct 39038257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 15995448 - 15995395
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||| ||| ||||    
T  15995448 aggcaacatcttaaaataaatcaaatactcaatagaaaccaaaacaaaataaaa 15995395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 30081982 - 30082096
Alignment:
Q  110 ccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatcca---tcaaaaccttttttagtttcttgttatga 206  Q
    |||||||| |||||||| ||| |||||| |||| ||||||||| ||||| || ||||||  |||| |    ||| || ||||||||||||||||||||||    
T  30081982 ccagggccgttcctagcattttaggggccttaggcatagtttgcaaaaaagg-cccttacataatactacttcataaacttttttagtttcttgttatga 30082080  T
Q  207 ttttactaacgcttca 222  Q
    ||||| || |||||||    
T  30082081 ttttagtagcgcttca 30082096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 13754311 - 13754207
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  |||||||| |||||||| ||| | | |||||| |||  ||||| | ||  | ||||||| ||||||  |||||||||||||||||||||||    
T  13754311 aacatctaaaaataaattaaatactctatatacaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaatttta 13754212  T
Q  370 gcacc 374  Q
    |||||    
T  13754211 gcacc 13754207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 135982 - 135904
Alignment:
Q  144 catagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgcttca 222  Q
    |||||||||| |||| ||| |||||  |||| || || || |||||||||||| || ||||||||||| ||||||||||    
T  135982 catagtttgagaaaaggggaccttacataatacaccataaacttttttagttttttattatgattttattaacgcttca 135904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 377
Target Start/End: Original strand, 8113410 - 8113519
Alignment:
Q  267 ggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatt 366  Q
    ||||||||||  |||||||| || ||||| ||||| | |||||| ||| ||||||   ||| | || ||||||||| |  |||||||||| |||||||||    
T  8113410 ggcaacatctgaaaataaattaa-tactctatagacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaatt 8113508  T
Q  367 ttagcacctaa 377  Q
    |||||||||||    
T  8113509 ttagcacctaa 8113519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 12380229 - 12380188
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaa 307  Q
    |||||||||||| |||||||||| |||||| |||||||||||    
T  12380229 aggcaacatcttaaaataaatcagatactcaatagaaatcaa 12380188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 23306002 - 23305904
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| | |||  |||| ||||||||||||||| ||| |||||  ||||  |||| || |  |||||||||||||||||||||||    
T  23306002 cagggccgttcctagcgttttaagggtcttaggcatagtttgaaaaaa-gggtccttacataatatatcataaac-attttagtttcttgttatgatttt 23305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 110 - 415
Target Start/End: Original strand, 31884381 - 31884684
Alignment:
Q  110 ccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattt 209  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||  |||| ||||| ||| ||||||||||||||||||||||||    
T  31884381 ccagggccgttcctagcgtttaaggggccttagacatagtttgaaaaaatgggcccttacataatacatcataac-ttttttagtttcttgttatgattt 31884479  T
Q  210 tactaacgcttcannnnnnnn-cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    |||||||||||||         ||||||||||||||||| ||||||||         |||||||||||| ||||||||||||||||||||||||| ||||    
T  31884480 tactaacgcttcatttttttttcttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactccatagaaaccaaa 31884577  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  31884578 actaaacaaaataccataggattagagaacaatagcttctccgaagtaaactgaaattttagcacctaaatagtcgacactgaatttttgacatctaatg 31884677  T
Q  409 atagtaa 415  Q
    |||||||    
T  31884678 atagtaa 31884684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 6024178 - 6024480
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| | |||| |||| |||||||||||||||||||||||||  ||||  |||| || |||||||||||| |||||||||||||    
T  6024178 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataaacttttttagttttttgttatgatttt 6024277  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    |||||| ||| |        ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||||||||||||| ||||||    
T  6024278 actaacacttaattttttgtcttcgcttttcactatacgataaaaggttttct--aggcaacatcttcaaataaatcaaatactccatagaaaccaaaac 6024375  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  6024376 taaacaacataccataggattagagaacaattgcttctgcgaaataaactgaaattttagcacttaaatagtagacactgaatttttgacatctaatgat 6024475  T
Q  411 agtaa 415  Q
    |||||    
T  6024476 agtaa 6024480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 111 - 411
Target Start/End: Original strand, 23044327 - 23044620
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||| |||| |||||| |||| ||||||| ||||||||| |||||||  |||| ||||| || ||||||||||||||||||||||||||    
T  23044327 cagggccgttcctagtgtttaaggggccttaggcatagttcgaaaaaatgagcccttacataatacatcataaacttttttagtttcttgttatgatttt 23044426  T
Q  211 actaacgcttca--nnnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||| ||||||| ||||    
T  23044427 actaacgcttcattttcttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactcaatagaaaccaaa 23044524  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||    | | |||      ||||||| || | |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  23044525 actaaacaaaactaaaca-gat------acaatagattctccgaagtagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatg 23044617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 366
Target Start/End: Complemental strand, 6584171 - 6584073
Alignment:
Q  268 gcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatt 366  Q
    |||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||    
T  6584171 gcaacatcttcaaataaatcaaatattctatagaaaccaaaactaaacaaaataccatagaattagagagcaattgctcatgcgaagtagactgaaatt 6584073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 33100347 - 33100439
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagc 371  Q
    ||||||||||||||||| ||||| | |||||| ||| ||||| || ||| | |||||||||||| |  |||||||||||||||||||||||||    
T  33100347 aaataaatcaaatactctatagacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattttagc 33100439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 47185550 - 47185439
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||  ||||||||||||||||| ||||| |||||||| | | |||||| | ||| | || |||||||||||  ||| |||||||||||||||    
T  47185550 aggcaacatctaaaaataaatcaaatactctatagacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaat 47185451  T
Q  366 tttagcacctaa 377  Q
    |||  |||||||    
T  47185450 tttgacacctaa 47185439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 44880017 - 44879908
Alignment:
Q  268 gcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattt 367  Q
    |||||||||  | |||||||||||||| | |||| | |||||| ||| ||||||   ||| | || ||||||||| |  |||||||||||||| ||||||    
T  44880017 gcaacatctgaatataaatcaaatacttcttagacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattt 44879918  T
Q  368 tagcacctaa 377  Q
    ||||||||||    
T  44879917 tagcacctaa 44879908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 52448339 - 52448235
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  |||||||| |||||||| ||| | | |||||| |||  ||||| | ||  | ||||||| ||||||  |||||||||||||||||||||||    
T  52448339 aacatctgaaaataaattaaatactctatatacaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaatttta 52448240  T
Q  370 gcacc 374  Q
    |||||    
T  52448239 gcacc 52448235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 10994103 - 10994161
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | |||| || ||||||  ||||||||||||||||||||||||||||    
T  10994103 aaaataccgtagaagtagaaaaaaatagcaaatgcgaagtagactgaaattttagcacc 10994161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 19157243 - 19157185
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  19157243 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 19157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 27941470 - 27941528
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  27941470 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 27941528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 9467144 - 9467197
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||||  ||||||||    
T  9467144 aggctacatcttaaaataaatcaaatactcaatagaaagcaaaagaaaacaaaa 9467197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 22918103 - 22918066
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaa 303  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  22918103 aggcaacatctttaaataaatcagatactcaatagaaa 22918066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 36641667 - 36641630
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaa 303  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  36641667 aggcaacatcttaaaataaatcaaatactcaatagaaa 36641630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 28142872 - 28143175
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  28142872 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataatacatcataac-ttttttagtttcttgttatgatttt 28142970  T
Q  211 actaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          ||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||| ||||    
T  28142971 actaacgcttcattttttttttcttcgcttttcactataagataaaag--cttttttaggcaacatctttaaataaatcaaatactccatagaaaccaaa 28143068  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    ||||||||||||||||||||||||||||||| |||||| | | ||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  28143069 actaaacaaaataccataggattagagaacagtagcttctccaaagtaaactgaaattttagcacctaaatagtaggcactgaatttttgacatctaatg 28143168  T
Q  409 atagtaa 415  Q
    |||||||    
T  28143169 atagtaa 28143175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 14191738 - 14192040
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| | |||| |||| |||||||||||||||||||||||||  ||||  |||| || |||||||||||| |||||||||||||    
T  14191738 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaaatgggcccttacataatatatcataaacttttttagttttttgttatgatttt 14191837  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    |||||| ||| |        ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||||||||||||| ||||||    
T  14191838 actaacacttaattttttttcttcgcttttcactataagataaaaggttttct--aggcaacatcttcaaataaatcaaatactccatagaaaccaaaac 14191935  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  14191936 taaacaacataccataggattagagaacaattgcttctgcgaaataaactgaaattttagcacttaaatagtagacactgaatttttgacatctaatgat 14192035  T
Q  411 agtaa 415  Q
    |||||    
T  14192036 agtaa 14192040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 51338314 - 51338018
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||| |||| |||||| |||| ||||||| |||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||    
T  51338314 cagggccgttcctagtgtttaaggggccttaggcatagttcgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgatttt 51338215  T
Q  211 actaacgcttca--nnnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||| ||||||| ||||    
T  51338214 actaacgcttcattttcttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaa 51338117  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||    | | |||      |||||||||| | |||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  51338116 actaaacaaaactaaaca-gat------acaatagcttctccgaa-tagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatg 51338025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 31915665 - 31915560
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  ||||||||||||||| | ||| | | |||||| ||| |||||||||||| | |||| |||||||||  |||  |||||||||||||||||    
T  31915665 caacatctgaaaataaatcaaatacactataaacaccaaaacaaaataaaataccatagaagtagacaacaatagcacatgataagtagactgaaatttt 31915566  T
Q  369 agcacc 374  Q
    ||||||    
T  31915565 agcacc 31915560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 10142704 - 10142608
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacct 375  Q
    |||||||||||||||| |||||| | |||||| ||| |||||  | ||| | || |||||||||||  ||| |||||||||||||||||||||||||    
T  10142704 aaataaatcaaatactgcatagacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacct 10142608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 52460700 - 52460633
Alignment:
Q  307 aaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||| ||| |||||||| ||| | |||||||||||| |  ||||||||||||||||||||||||||||    
T  52460700 aaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattttagcacc 52460633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 55851911 - 55851954
Alignment:
Q  33 aagatgagaaaattggattttctctaaaaagtgcagcggaaaat 76  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  55851911 aagatgagaaaattggattttctctagaaaatgcagcggaaaat 55851954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 3665055 - 3665128
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaata 342  Q
    ||||||||  ||||||||||||||||  ||||| | |||||| ||| |||||||||||| | ||||||||||||    
T  3665055 caacatctgaaaataaatcaaatactatatagacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 25201866 - 25201790
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaata 342  Q
    |||||||||||  ||||||||||||||||||||||| | ||| || | | |||||||| ||| | ||||||||||||    
T  25201866 aggcaacatctaaaaataaatcaaatactccatagacaccaacacaagataaaataccgtagaagtagagaacaata 25201790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 52459419 - 52459376
Alignment:
Q  331 tagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||||||| |  ||||||||||||||||||||||||||||    
T  52459419 tagagaacaataacacatgcgaagtagactgaaattttagcacc 52459376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 7413698 - 7413756
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  7413698 aaaataccgtagaaatagagaaaaatagcacatgtgaagtagactgaaattttagcacc 7413756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 7459779 - 7459837
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  7459779 aaaataccgtagaaatagagaaaaatagcacatgtgaagtagactgaaattttagcacc 7459837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 10094976 - 10095034
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  10094976 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 10095034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 24611006 - 24611094
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||||||||| || ||| ||| |||||| ||| |||||||| ||| | ||||||||| ||||  |||||||||||| ||||||||||    
T  24611006 aaataaatcaaatattctata-aaaccaaaacaaaataaaataccgtagaagtagagaaca-tagcacatgcgaagtagattgaaatttta 24611094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 28803848 - 28803906
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | |||| || ||||||  ||||||||||||||||||||||||||||    
T  28803848 aaaataccgtagaagtagaaaaaaatagcaaatgcgaagtagactgaaattttagcacc 28803906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 377
Target Start/End: Complemental strand, 13957820 - 13957711
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    ||||||||| |  ||||||||||||||||| | |||   |||||| ||| |||||| | ||| | || |||||||||||   ||| ||||||||||||||    
T  13957820 aggcaacatatgaaaataaatcaaatactctaaagac--caaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaat 13957723  T
Q  366 tttagcacctaa 377  Q
    || |||||||||    
T  13957722 ttgagcacctaa 13957711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 42511313 - 42511357
Alignment:
Q  334 agaacaatagcttatgcgaagtagactgaaattttagcacctaaa 378  Q
    |||||||||||  | || |||||||||||||||||||||||||||    
T  42511313 agaacaatagcacacgcaaagtagactgaaattttagcacctaaa 42511357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 119 - 415
Target Start/End: Original strand, 2240 - 2536
Alignment:
Q  119 ttcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgc 218  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2240 ttcctagcgtttaaggggcttttggcatagtttgaaaaaatgggcccttacataatgcatcataaacttttttagtttcttgttatgattttactaacgc 2339  T
Q  219 ttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaaca 316  Q
    ||||          |||||||||||| |||| ||||||||         |||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  2340 ttcattttttttttcttcgcttttcattataagataaaag--cttttttaggcaacatcttcaaataaatcaaatactccgtagaaaccaaaactaaaca 2437  T
Q  317 aaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  2438 aaataccataggattagagaacaatagcttctccgaagtatactgaaattttagcacctaaatagtagacactgaatttttgatatctaatgatagtaa 2536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 6926981 - 6927285
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  ||||  |||| ||  |||||||||||||||||||||||||    
T  6926981 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgatttt 6927080  T
Q  211 actaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||| ||          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||||||| |||||||| ||||    
T  6927081 actaacgctacatttttcttttcttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatacttcatagaaaccaaa 6927178  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  6927179 actaaacaaaatactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatg 6927278  T
Q  409 atagtaa 415  Q
    |||||||    
T  6927279 atagtaa 6927285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 28517138 - 28516834
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||  ||||  |||| ||  |||||||||||||||||||||||||    
T  28517138 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaaatgggcccttacataataaatcataaatttttttagtttcttgttatgatttt 28517039  T
Q  211 actaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||| ||| ||          ||||||||||||||||| ||||||||         |||||||||||| |||||||||||||||| |||||||| ||||    
T  28517038 actaatgctacatttttcttttcttcgcttttcactataagataaaag--cttttttaggcaacatcttcaaataaatcaaatacttcatagaaaccaaa 28516941  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  28516940 actaaacaaaatactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatg 28516841  T
Q  409 atagtaa 415  Q
    |||||||    
T  28516840 atagtaa 28516834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 11994156 - 11994442
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||||||||||||    
T  11994156 cagggccgttcctagcgtttcaggggccttagacatagtttgaaaaaatgggccgttacataatacatcaaaaccttttttagtttcttgttatgatttt 11994255  T
Q  211 actaacgcttcannnnnnnn-cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    ||||||||||||         |||||||||||||||||||||||||||        |||||||||||||||||||||                  |||||    
T  11994256 actaacgcttcatttttttttcttcgcttttcactataggataaaaggttttttt-aggcaacatctttaaataaat------------------caaaa 11994336  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  11994337 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagtacctaaatagtagacagtgaatttgggacatctaatga 11994436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 114 - 415
Target Start/End: Original strand, 2878632 - 2878932
Alignment:
Q  114 ggccattcctagcgtttcaggggctttagacatagtttgaaaaaa-tgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttac 212  Q
    |||| |||||||||||| | |||  |||| ||||||||||||||| |||||||||   ||||  |||| || |||||||||||| |||||||||||||||    
T  2878632 ggccgttcctagcgttttaagggtcttaggcatagtttgaaaaaaatgggcccttgcataatatatcataaacttttttagttttttgttatgattttac 2878731  T
Q  213 taacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaacta 312  Q
    |||| ||| |        ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  2878732 taacacttaattttttttcttcgcttttcactataagataaaaggttttct--aggcaacatcttcaaataaatcaaatactccatagaaaccaaaacta 2878829  T
Q  313 aacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatag 412  Q
    ||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  2878830 aacaaaataccataggattagagaacaattgcttctgcgaaataaactgaaattttagcacttaaatagtagacactgaatttttgacatctaatgatag 2878929  T
Q  413 taa 415  Q
    |||    
T  2878930 taa 2878932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 310 - 415
Target Start/End: Complemental strand, 28509732 - 28509627
Alignment:
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  28509732 ctaaacaaaatactataggattagagaacaatagcttctccgaagtagactgaaattttagcacctaaatagtagacactgaatttttgacatctaatga 28509633  T
Q  410 tagtaa 415  Q
    ||||||    
T  28509632 tagtaa 28509627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 2807593 - 2807690
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattt 367  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||| |||  ||| ||||| ||||||||||    
T  2807593 aacatcttcaaataaatcaaatgctccatagaaaccaaaactaaacaaaataccatagaattagacaacaattgctcttgcaaagtatactgaaattt 2807690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 9381757 - 9381855
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaa 377  Q
    ||||||||||||||||||||||| | |||||| ||| ||| || | ||| | || |||||||||||  |||||||||||||||||||||||||||||||    
T  9381757 aaataaatcaaatactccatagacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaa 9381855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 377
Target Start/End: Original strand, 11648016 - 11648127
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    ||||||||||| ||||| ||||||||||| |||||| |  ||||| ||| ||||||| |||  | ||| |||||||| |  |||||||||||||||||||    
T  11648016 aggcaacatctgtaaatcaatcaaatacttcatagacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaat 11648115  T
Q  366 tttagcacctaa 377  Q
    ||||||||||||    
T  11648116 tttagcacctaa 11648127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 16729926 - 16729826
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  |||||||| |||||||| ||  | | |||||| ||| |||||| | ||| | ||||||| ||||||  |||||||||||||||||||||||    
T  16729926 aacatctgaaaataaattaaatactctatgtacaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaatttta 16729827  T
Q  370 g 370  Q
    |    
T  16729826 g 16729826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 1981731 - 1981688
Alignment:
Q  331 tagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||    
T  1981731 tagagaaaaatagcatatgtgaagtagactgaaattttagcacc 1981688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 45117616 - 45117558
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | |||| || ||||||  ||||||||||||||||||||||||||||    
T  45117616 aaaataccgtagaagtagaaaaaaatagcaaatgcgaagtagactgaaattttagcacc 45117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 24683329 - 24683281
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaa 314  Q
    |||||| ||||| |||||||| |||||||||||| ||| ||||||||||    
T  24683329 aggcaaaatcttcaaataaatgaaatactccatataaaccaaaactaaa 24683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 111 - 415
Target Start/End: Original strand, 28945236 - 28945539
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| |||||| ||||| |||||| |||| |||||||||||||||||| ||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  28945236 cagggccgttcctaacgtttaaggggccttaggcatagtttgaaaaaatggacccttacataatacatcataac-ttttttagtttcttgttatgatttt 28945334  T
Q  211 actaacgcttcannnnnnnn--cttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaa 308  Q
    ||||||||||||          ||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||| ||||    
T  28945335 actaacgcttcattttttttttcttcgcttttcactataagataaaag--tttttttaggcaacatctttaaataaatcaaatactccatagaaaccaaa 28945432  T
Q  309 actaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatg 408  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  28945433 actaaacaaaataccataggattagagaacaatagcttctccaaagtaaactgaaattttagcacctaaatagtaggcactgaatttttgacatctaatg 28945532  T
Q  409 atagtaa 415  Q
    |||||||    
T  28945533 atagtaa 28945539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 110 - 415
Target Start/End: Complemental strand, 26222365 - 26222062
Alignment:
Q  110 ccagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattt 209  Q
    |||||||| |||||||||||| | |||| |||| |||||||||||||||||| ||||||  ||||  |||| || |||||||||||| ||||||||||||    
T  26222365 ccagggccgttcctagcgttttaagggccttaggcatagtttgaaaaaatggacccttacataatatatcataaacttttttagttttttgttatgattt 26222266  T
Q  210 tactaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaa 309  Q
    || |||| ||| |        ||||||||||||||||| |||||||||        |||||||||||| ||||||||||||||||||||||||| |||||    
T  26222265 tagtaacacttaattttttttcttcgcttttcactataagataaaaggttttct--aggcaacatcttcaaataaatcaaatactccatagaaaccaaaa 26222168  T
Q  310 ctaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatga 409  Q
    |||||||| ||||||||||||||||||||||| |||| |||||| || ||| |||||||||||| |||||| |||||| ||||||| | |||||||||||    
T  26222167 ctaaacaacataccataggattagagaacaattgcttctgcgaaataaactaaaattttagcacttaaataatagacactgaattttttacatctaatga 26222068  T
Q  410 tagtaa 415  Q
    ||||||    
T  26222067 tagtaa 26222062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 415
Target Start/End: Complemental strand, 36297358 - 36297069
Alignment:
Q  119 ttcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgattttactaacgc 218  Q
    ||||||| |||| |||||  |||| ||||||| |||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  36297358 ttcctagtgtttaaggggtcttaggcatagttcgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgattttactaacgc 36297259  T
Q  219 ttca--nnnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaaca 316  Q
    ||||          |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  36297258 ttcattttcttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaaactaaaca 36297161  T
Q  317 aaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgatagtaa 415  Q
    |||    | | |||      |||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  36297160 aaactaaaca-gat------acaatagcttctccgaagtagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatgatagtaa 36297069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 412
Target Start/End: Complemental strand, 42722894 - 42722607
Alignment:
Q  111 cagggccattcctagcgtttcaggggctttagacatagtttgaaaaaatgggcccttatgtaatccatcaaaaccttttttagtttcttgttatgatttt 210  Q
    ||||||| ||||||| |||| |||||| |||| ||||||| |||||||||||||||||  |||| ||||| || ||||||||||||||||||||||||||    
T  42722894 cagggccgttcctagtgtttaaggggccttaggcatagttcgaaaaaatgggcccttacataatacatcataaacttttttagtttcttgttatgatttt 42722795  T
Q  211 actaacgcttcannnnnnnncttcgcttttcactataggataaaaggnnnnnnnnaggcaacatctttaaataaatcaaatactccatagaaatcaaaac 310  Q
    |||||||||           |||| |||||||||||| ||||| |          |||||||||||| ||||||||||||||||| ||||||| ||||||    
T  42722794 actaacgct-----cttttccttcacttttcactataagataaca--acttttttaggcaacatcttcaaataaatcaaatactctatagaaaccaaaac 42722702  T
Q  311 taaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacctaaatagtagacaatgaatttgtgacatctaatgat 410  Q
    |||||||||    | | |||      |||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  42722701 taaacaaaactaaaca-gat------acaatagcttctccgaagtagactgaaattttagcacctaaatagtagacacttaatttttgacatctaatgat 42722609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 44310845 - 44310740
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttt 368  Q
    ||||||||  ||||||||||||||||| ||| | | |||||| ||| |||||| | ||| | ||||||||||||||  |||| ||||| |||||||||||    
T  44310845 caacatctgaaaataaatcaaatactctatacacaccaaaacaaaataaaatatcgtagaagtagagaacaatagcacatgcaaagtatactgaaatttt 44310746  T
Q  369 agcacc 374  Q
    ||||||    
T  44310745 agcacc 44310740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 20226739 - 20226818
Alignment:
Q  31 tgaagatgagaaaattggattttctctaaaaagtgcagcggaaaatccttcaaagcgggtaccaaattagttctgatacc 110  Q
    ||||||||||| ||||  |||||||| | ||| |||||||||||||||||||| | || ||||| ||||| |||||||||    
T  20226739 tgaagatgagagaattaaattttctcaagaaaatgcagcggaaaatccttcaaggaggataccagattagctctgatacc 20226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 17967230 - 17967336
Alignment:
Q  269 caacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa-taccataggattagagaacaatagcttatgcgaagtagactgaaattt 367  Q
    ||||||||  |||||||| ||||| || ||| | |||||||| ||| |||| |||| ||| | ||||||| ||||||  ||| |||||||||||||||||    
T  17967230 caacatctgaaaataaattaaatattctatatacatcaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 17967329  T
Q  368 tagcacc 374  Q
    |||||||    
T  17967330 tagcacc 17967336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 18705630 - 18705706
Alignment:
Q  36 atgagaaaattggattttctctaaaaagtgcagcgg--aaaatccttcaaagcgggtaccaaattagttctgatacc 110  Q
    |||||||||||| |||||||||| ||| ||||||||  |||||||||||| | || ||||| ||||| |||||||||    
T  18705630 atgagaaaattgaattttctctagaaaatgcagcggaaaaaatccttcaaggtggataccagattagctctgatacc 18705706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 5049605 - 5049547
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  5049605 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 5049547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 21906529 - 21906471
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  ||| ||||||||||||||||||||||||    
T  21906529 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcacc 21906471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 22070653 - 22070595
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcacc 374  Q
    |||||||| ||| | ||||||| ||||||  |||||||||||||||||||| |||||||    
T  22070653 aaaataccgtagaagtagagaaaaatagcacatgcgaagtagactgaaattctagcacc 22070595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 48596306 - 48596363
Alignment:
Q  316 aaaataccataggattagagaacaatagcttatgcgaagtagactgaaattttagcac 373  Q
    |||||||| ||| | ||||||| ||||||  ||| |||||||||||||||||||||||    
T  48596306 aaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattttagcac 48596363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 9908095 - 9908179
Alignment:
Q  27 aaaatgaagatgagaaaattggattttctctaaaaagtgcagcggaaaa-tccttcaaagcgggtaccaaattagttctgatacc 110  Q
    ||||||||  ||||||||||  |||||||| | |||||||||||||||| | |||||| | || ||||| ||||| |||||||||    
T  9908095 aaaatgaaagtgagaaaattttattttctcaagaaagtgcagcggaaaatttcttcaaggtggataccagattagctctgatacc 9908179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 12028326 - 12028218
Alignment:
Q  270 aacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    |||||||  ||| |||||||||| | |||||| |  ||||| ||| |||||| | ||| | || ||||||| | |  ||| |||||||||||||||||||    
T  12028326 aacatctgaaaacaaatcaaatatttcatagacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaatttta 12028227  T
Q  370 gcacctaaa 378  Q
    |||||||||    
T  12028226 gcacctaaa 12028218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 42055719 - 42055795
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaata 342  Q
    ||||||||| |  ||||||||||||||||  ||||| | |||||| ||| |||||||| ||| | ||||||||||||    
T  42055719 aggcaacatatgaaaataaatcaaatactttatagacaccaaaacaaaataaaataccgtagaagtagagaacaata 42055795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 49228288 - 49228332
Alignment:
Q  334 agaacaatagcttatgcgaagtagactgaaattttagcacctaaa 378  Q
    ||||||||||| | ||||||| ||||| |||||||||||||||||    
T  49228288 agaacaatagcatctgcgaagcagacttaaattttagcacctaaa 49228332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 1155 - 1065
Alignment:
Q  279 aaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaatttta 369  Q
    ||||||||||||||||||||||| | |||||| ||| |||||| ||||| | || |||||||||||  |||| ||||||||| ||||||||    
T  1155 aaataaatcaaatactccatagacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaatttta 1065  T

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Target: scaffold1364 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 1307 - 1198
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||  |||||||||||| ||| |||||| |||||| | ||| |||||||| ||| | |||| ||||||| |   |||||||| |||||||||    
T  1307 aggcaacatctgaaaataaatcaaacacttcatagacatcaaaccaaaataaaataccgtagaagtagaaaacaataacacttgcgaagttgactgaaat 1208  T
Q  366 tttagcacct 375  Q
    || |||||||    
T  1207 ttcagcacct 1198  T

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Target: scaffold1266 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 1773 - 1664
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||||||||  |||||||||||| ||| |||||| | |||| | ||| |||||||| ||| | |||||||||||| |   |  |||||||||||||||    
T  1773 aggcaacatctgaaaataaatcaaacacttcatagacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaat 1674  T
Q  366 tttagcacct 375  Q
    ||||||||||    
T  1673 tttagcacct 1664  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 18245 - 18354
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaataccataggattagagaacaatagcttatgcgaagtagactgaaat 365  Q
    |||||| ||||  |||||||||||| | |  ||||| | |||| | ||| |||||||||||| | |||||||||||| |   |  |||||||||||||||    
T  18245 aggcaatatctaaaaataaatcaaacatttaatagacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaat 18344  T
Q  366 tttagcacct 375  Q
    ||||||||||    
T  18345 tttagcacct 18354  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 66735 - 66682
Alignment:
Q  266 aggcaacatctttaaataaatcaaatactccatagaaatcaaaactaaacaaaa 319  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||||  ||||||||    
T  66735 aggctacatcttaaaataaatcaaatactcaatagaaagcaaaagaaaacaaaa 66682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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