View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_6 (Length: 414)
Name: NF1906_low_6
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 35780845 - 35780545
Alignment:
| Q |
7 |
gacatcatcacaatgcttggagaggcgaagccaagaaggaaaagcatttgtggcaatggaaggcaagagagtagcattgaaaagggaacaatctttacca |
106 |
Q |
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| T |
35780845 |
gacatcatcacaatgcttggagaggcgaagccaagaaggaaaagcatttgtggcaatggaaggcaagagagtagcattgaaaaaggaacaatctttacca |
35780746 |
T |
|
| Q |
107 |
catccccagtagcaagtcttttgtagcacaagtttagtttaatatgttgacttcctttggcctcaaaatttggttgtatgctttgcttaataccagtttc |
206 |
Q |
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| T |
35780745 |
catccccagtagcaagtcttttgtagcacaagtttagtttaatatgttgacttcctttggcctcaaaatttggttgtatgctttgcttaataccagtttc |
35780646 |
T |
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| Q |
207 |
ttagcagatagtaaatacatgtattttgttttgttcatcattttctttttcggttaaagaaatggtcattccagaactagaatcgatccatcaacaacaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35780645 |
ttagcagatagtaaatacatgtattttgttttgttcatcattttctttttcggttaaagaaatggtcattccagaactagaatcgatccatcaacaacaa |
35780546 |
T |
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| Q |
307 |
a |
307 |
Q |
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| T |
35780545 |
a |
35780545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 38909959 - 38909868
Alignment:
| Q |
307 |
aaccactatggatatgtaacttagcactttgcagccaaagatggacgtcgtgtcaccttctaaacttttgtcatcaataactttgtagctca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38909959 |
aaccactatggatatgtaacttagcactttgcagccaaagatggacgtcgtgtcaccttccaaacttttgtcatcaataactttgtagctca |
38909868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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