View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1906_low_9 (Length: 313)
Name: NF1906_low_9
Description: NF1906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1906_low_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 3017861 - 3017564
Alignment:
| Q |
16 |
tgttgcacacttttgaagaacactttcccccaactttcgagcaattggtgaaacaacctgaatcataatgatagtgaccacgacaattataagcaatcca |
115 |
Q |
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| T |
3017861 |
tgttgcacacttttgaagaacactttttcccaactttcgagcaattggcgaaaccacctgaatcataatgatagtgatcacgacaattataagcaatcca |
3017762 |
T |
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| Q |
116 |
taattaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaaactccaaccttattgtctttctttacacaatc |
215 |
Q |
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| T |
3017761 |
taatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaaacaccaaccttattgtctttctttacacaatc |
3017662 |
T |
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| Q |
216 |
taagattggatagagtaagccgagagatatatcgtcactttcctcaataacacgggccattatggcttccatggacgagaaaacaatttctggatgat |
313 |
Q |
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| T |
3017661 |
taagattggatagagtaagccgagagatatatcgtcactttcctcaataacacgggccattatggcttccatggacgagaaaacaatttctggatgat |
3017564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 3020962 - 3020776
Alignment:
| Q |
16 |
tgttgcacacttttgaagaacactttcccccaactttcgagcaattggtgaaacaacctgaatcataatgatagtgaccacgacaattataagcaatcca |
115 |
Q |
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| T |
3020962 |
tgttgcacacttttgaagaacactttcccccaactttcgagcatttggtgaaacaacctgaatcataatgatagtgatcacgacaattataagcaatcca |
3020863 |
T |
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| Q |
116 |
taattaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaaactccaaccttattgtctt |
202 |
Q |
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| T |
3020862 |
taatgaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgagattaaatttccaaactccacccttattgtctt |
3020776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 3020776 - 3020694
Alignment:
| Q |
231 |
taagccgagagatatatcgtcactttcctcaataacacgggccattatggcttccatggacgagaaaacaatttctggatgat |
313 |
Q |
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| T |
3020776 |
taagccaagagatatatcgtcactttcctcaaaaacacggatcattatggtttccatggacgagaaaacaatttctggatgat |
3020694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 3033823 - 3033529
Alignment:
| Q |
16 |
tgttgcacacttttgaagaacactttcccccaactttcgagcaattggtgaaacaacctgaatcataatgatagtgaccacgacaattataagcaatcca |
115 |
Q |
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||||||||| ||| ||| || |||||||||||||||||||||||||| |||| |||||||||| |||| || ||| |||||||||||| ||| || |
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| T |
3033823 |
tgttgcacaactttcaaggactctttcccccaactttcgagcaattggcaaaacctcctgaatcatgatgacagcagccatgacaattataagaaattca |
3033724 |
T |
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| Q |
116 |
taattaaatgaaataagtttcagtttcataatcacaatctattaaaaagaatgaga--ttaaatttccaaactccaaccttattgtctttctttacacaa |
213 |
Q |
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| T |
3033723 |
t-----aatgaaatatgtttcagtttaacaatcacgacctattaacaagaatgaaacgaaaaaattacaaacaccaacctcattgtctttctttacactg |
3033629 |
T |
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| Q |
214 |
tctaagattggatagagtaagccgagagatatatcgtcactttcctcaataacacgggccattatggcttccatggacgagaaaacaatttctggatgat |
313 |
Q |
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| T |
3033628 |
tctaagattggagagagtaagtcatcagatatttcttcactttcttctagacagaggatcattatagtttccatggacgagaaaacattatctggatgat |
3033529 |
T |
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