View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_high_11 (Length: 434)
Name: NF19070_high_11
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 92 - 367
Target Start/End: Complemental strand, 34289525 - 34289250
Alignment:
| Q |
92 |
cttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
191 |
Q |
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| T |
34289525 |
cttgtgtaagacttttatttggaattgattttactgttttatcaataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtattt |
34289426 |
T |
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| Q |
192 |
atatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttcggatct |
291 |
Q |
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| T |
34289425 |
atatttttatataagaaaaaattatattaaagtgccaacattacattggtttgagtgtaacaaacttaaatttcttataaaaagtcttaagttcgaatct |
34289326 |
T |
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| Q |
292 |
tgcgaatggagaaaatgtcgtttcgaaactcggtgttgaattaggttagtgttataattaaggtctgtaatactaa |
367 |
Q |
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| T |
34289325 |
tgcgaatggagaaaatgtcgtttggagagtctgtgttgaattaagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 285
Target Start/End: Complemental strand, 34301900 - 34301716
Alignment:
| Q |
103 |
cttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaattta---atgcattggtatttatattttt |
199 |
Q |
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| T |
34301900 |
cttttatttggaattgattttagtgttttatcaattaaactaacgacccttcaatttgatttttactaagatttatttatgcattcgtatttatattttt |
34301801 |
T |
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| Q |
200 |
atataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttc |
285 |
Q |
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| T |
34301800 |
atataag-aaaaattatagtgaaatggcaacattgcattggtttgcgtgtaacaagcttgaatcgcttaagaaaagtcttaagttc |
34301716 |
T |
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