View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19070_high_12 (Length: 398)
Name: NF19070_high_12
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_12 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 47528679 - 47529052
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47528679 |
atgtgatcgatgtccttctgcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
47528778 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaagg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47528779 |
tgtcgacctaaatgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaagg |
47528878 |
T |
|
| Q |
218 |
caacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgcgaacaggttcatatgtctaaagaagct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
47528879 |
caacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgtgaacaggttcatatgtctaaagaagct |
47528978 |
T |
|
| Q |
318 |
attgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagtgatgatgatg |
391 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47528979 |
attgtggaaaccaattaaggttgcagacaatctaacttggacactgttgaagaatgtgaatagtgatgatgatg |
47529052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 47523332 - 47523700
Alignment:
| Q |
19 |
tgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgtt |
118 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
47523332 |
tgtgatcaatgtccttctgcattccacctcagttgtttaggtctcgatcgagttccggatggcgattggttctgtccaacatgttgttgcaaaatatgct |
47523431 |
T |
|
| Q |
119 |
gtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaaggc |
218 |
Q |
| |
|
|||||| ||| | || ||||||||| ||||| |||||| | |||||||||||||||||||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
47523432 |
atcgacccaaatgcaagcaagaatgtgcagatggcaatgacagcaatattcttgtttgtgttcaatgtgcacaaaagtttcattttgggtgtgtaaaggc |
47523531 |
T |
|
| Q |
219 |
aacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgcgaacaggttcatatgtctaaagaagcta |
318 |
Q |
| |
|
|||| || ||| |||||||| ||||| |||| | ||||||||||||||||||||| | ||||||| | |||| |||| |||||||||||||| | |
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|
| T |
47523532 |
tttaggacttggatcaagtcacattgagagcaatggtgaaaagaagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttg |
47523631 |
T |
|
| Q |
319 |
ttgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagtgatgat |
387 |
Q |
| |
|
| |||||||||| | ||||||| |||||||||||||||| | ||||||||||||| || ||||||| |
|
|
| T |
47523632 |
tcagggaaaccaataacagttgcagctaatctaacttggacattattgaagaatgtgagtaatgatgat |
47523700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 47550444 - 47550601
Alignment:
| Q |
65 |
atcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaa |
164 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| | ||| ||||| | ||||||||||| ||| ||| | |||||||||| | || || | |||| | | |
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|
| T |
47550444 |
atcgagatccggatggtatgtggttatgtccgagttgctgttgtagaatatgttgtcaacccaaatgcaaacaagaatttgcaaatgatattgatgatga |
47550543 |
T |
|
| Q |
165 |
tattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaaca |
222 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
47550544 |
tattcttgcttgtgttcaatgtgaacgaaaatttcactttgggtgtgcaaaggcaaca |
47550601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 44871119 - 44870746
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44871119 |
atgtgatcgatgtccttctgcattccaccttggttgtttaggtcttgatcgagttccagatggtgattggttctgtccaacttgttgttgcaaaatatgc |
44871020 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaagg |
217 |
Q |
| |
|
| |||||| ||| | |||||||||||| ||||| |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44871019 |
tatcgacccaaatgcaaacaagaatgtgcagatggcaatgaaaacaattttcttgtatgtgtacaatgtgagcaaaaatttcactttgggtgtgtaaaga |
44870920 |
T |
|
| Q |
218 |
caacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgcgaacaggttcatatgtctaaagaagct |
317 |
Q |
| |
|
| ||| ||| || ||||||||||| ||||| ||| |||||||||||||||||||||||| | ||||||| | ||||| |||| |||||||||||||||| |
|
|
| T |
44870919 |
ctacaagatttggatctagtcacacagagagcaatattaaaaagaagaattggttttgcagtgtagtttgtgggaacatgttcttatgtctaaagaagct |
44870820 |
T |
|
| Q |
318 |
attgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagtgatgatgatg |
391 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
44870819 |
attggggaaaccaattaaggttgcagataatataaattggacattgttgaagaatgtgagtagtgacgatgatg |
44870746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 9820236 - 9819883
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9820236 |
atgtgatcgatgcccttctgcattccacctaggttgtttaggtctcaatcgagttccaattggtgaatggttctgtccaacttgttgttgcaaaatatgc |
9820137 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaagg |
217 |
Q |
| |
|
| |||||| ||| | ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
9820136 |
tatcgacccaaatgcaaacaagaatgtaaagatcacaaggataacaatattcttgtttgtgttcaatgtgagcaaaaatatcactttggatgtgtaaagg |
9820037 |
T |
|
| Q |
218 |
caacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgcgaacaggttcatatgtctaaagaagct |
317 |
Q |
| |
|
| |||| ||||| || |||||||| ||||||||||||||| | | ||||| | ||||| |||| |||||||||||||| | |
|
|
| T |
9820036 |
ctgtaggaattgaatttaatcacatgg------------------agaattggttttgcagtgtggtttgtgggaacatgttcttatgtctaaagaagtt |
9819955 |
T |
|
| Q |
318 |
attgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagtgatgatga |
389 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||| |||||| || |||||||||||| ||||| |||||| |
|
|
| T |
9819954 |
gttaggaaaaccaattaaggttgcagataatttaacatggacattggtgaagaatgtgagtagtgttgatga |
9819883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 9853744 - 9854097
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9853744 |
atgtgatcgatgcccttctgcattccacctcggttgtttaggtctcaatcgagttccaattggtgaatggttctgtccaacttgttgttgcaaaatatgc |
9853843 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaagg |
217 |
Q |
| |
|
| |||||| ||| | ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||| |
|
|
| T |
9853844 |
tatcgacccaaatgcaaacaagaatgtaaagatcacaaggataacaatattcttgtttgtgttcaatgtgagcaaaaatatcactttggatgcgtaaagg |
9853943 |
T |
|
| Q |
218 |
caacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatatagtttgcgcgaacaggttcatatgtctaaagaagct |
317 |
Q |
| |
|
| |||| ||||| || |||||||| ||||||||||||||| | | ||||| | ||||| |||| |||||||||||||| | |
|
|
| T |
9853944 |
ctgtaggaattgaatttaatcacatgg------------------agaattggttttgcagtgtggtttgtgggaacatgttcttatgtctaaagaagtt |
9854025 |
T |
|
| Q |
318 |
attgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagtgatgatga |
389 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||| |||||| || |||||||||||| ||||| |||||| |
|
|
| T |
9854026 |
gttaggaaaaccaattaaggttgcagataatttaacatggacattggtgaagaatgtgagtagtgttgatga |
9854097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 21062012 - 21062204
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||| ||||| ||| ||| ||||| |||| |||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
21062012 |
atgtgatcgatgtccttctgcattccaccgctgttctttaggtctcgatggagttttggatagtgattagtttcgtccaacttgtggctgcaaaatatgt |
21062111 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgt |
210 |
Q |
| |
|
| || ||| || | |||||||| ||| || || ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
21062112 |
tatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttgcgtgtgttcaatgtgagcaaaaatttcaatttgggtgt |
21062204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 21081405 - 21081597
Alignment:
| Q |
18 |
atgtgatcgatgtccttcagcattccacctcagttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgt |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||| ||||| ||| ||| ||||| |||| |||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
21081405 |
atgtgatcgatgtccttctgcattccaccgctgttctttaggtctcgatggagttttggatagtgattagtttcgtccaacttgtggctgcaaaatatgt |
21081504 |
T |
|
| Q |
118 |
tgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgt |
210 |
Q |
| |
|
| || ||| || | |||||||| ||| || || ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
21081505 |
tatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttgcgtgtgttcaatgtgagcaaaaatttcaatttgggtgt |
21081597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 21080840 - 21080674
Alignment:
| Q |
50 |
gttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacaga |
149 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||||||| || || |||||||||||||||||| | |||||||||| | |||| ||||||| || | |
|
|
| T |
21080840 |
gttgtttaggtctcaatcgagttctggatggtgattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgtgcata |
21080741 |
T |
|
| Q |
150 |
taccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaaggc |
218 |
Q |
| |
|
| ||| | ||||| ||| ||||||||| |||||||| | | || ||||||||||||||||||||||| |
|
|
| T |
21080740 |
tggaaatcaaaacaacatt-ttgtttgtgatcaatgtgtg-aaaattttcactttgggtgtgtaaaggc |
21080674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 21061447 - 21061289
Alignment:
| Q |
50 |
gttgtttagatcttgatcgagttccggatggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacaga |
149 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| |||||||||| || || |||||||||||||||||| | |||||||||| | |||| ||||||| || | |
|
|
| T |
21061447 |
gttgtttaggtctcaatcgagttctggatggggattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgtgcata |
21061348 |
T |
|
| Q |
150 |
taccaatgataacaatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgt |
210 |
Q |
| |
|
| ||| | ||||| ||| ||||||||| |||||||| | | || ||||||||||||||| |
|
|
| T |
21061347 |
tggaaatcaaaacaacatt-ttgtttgtgatcaatgtgtg-aaaattttcactttgggtgt |
21061289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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