View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_high_25 (Length: 243)
Name: NF19070_high_25
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23938791 - 23939018
Alignment:
| Q |
1 |
cgcaactgtgaaattctcttgagcttccttcagacacttcaaaattcttcacagccaaattgcttaacaggagcaagaagctgctgccacaaactcaact |
100 |
Q |
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| T |
23938791 |
cgcaattgtgaaattctcttgagcttccttcagacacatcaaaattcttcacaaccaaattgcttaacattagcaagaatctgctgccacaaactaaaac |
23938890 |
T |
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| Q |
101 |
ttc-gtagtggacaaagtcacaatcgattgcttcttaagtgaccatgatattgctccattgcctatcataagcacaaaacttgatatactctttctatca |
199 |
Q |
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| T |
23938891 |
ttctgcagtggacaaagtcacaattgactgcttcttaaatgaccatgatattgctccattgcctataataaacacataacttgatgtactctttctgtca |
23938990 |
T |
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| Q |
200 |
tatgtatctccaacataatcaaagtttg |
227 |
Q |
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| T |
23938991 |
tctatatctccagcataatcaaagtttg |
23939018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 2083814 - 2083699
Alignment:
| Q |
53 |
agccaaattgcttaacaggagcaagaagctgctgccacaaactcaactttcgtagtggacaaagtcacaatcgattgcttcttaagtgaccatgatattg |
152 |
Q |
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||||||||| ||| ||| ||||| || ||||| | ||| ||||||||| ||||| || ||||| ||||| | |||||||||| |||||| ||||||| |
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| T |
2083814 |
agccaaattccttgacaagagcacaaaactgctacaacatactcaacttcagtagtagaaaaagtaacaattggttgcttcttagatgaccaagatattg |
2083715 |
T |
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| Q |
153 |
ctccattgcctatcat |
168 |
Q |
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| T |
2083714 |
ctccatttcctatcat |
2083699 |
T |
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