View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_high_33 (Length: 231)
Name: NF19070_high_33
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8948083 - 8947867
Alignment:
| Q |
1 |
caactgagctaagctcacgatgactaattaatagatagattaatacagtattaataaaactttaggatttctttgaccaaatnnnnnnncaaaagattaa |
100 |
Q |
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| T |
8948083 |
caactgagctaaactcacgatgactaattaatagatagattaatacaatattaataaaactttaggatttctttgaccaaataaaaaaacaaaagattaa |
8947984 |
T |
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| Q |
101 |
atcattaaacaataagtggattttaggatgagggttcaattaaatccctcatctatgaagcactnnnnnnnncgtttgatttaatcctgtccaaatttat |
200 |
Q |
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| T |
8947983 |
atcattaaacaataagtggattttaggatgagggctcaattaaattcctcattggtgaagcact-aaaaaaacgtttgatttaatcctgtccaaatttat |
8947885 |
T |
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| Q |
201 |
tgaaaattaaaacgagaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
8947884 |
tgaaaattaaaacgagaa |
8947867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 16081323 - 16081294
Alignment:
| Q |
1 |
caactgagctaagctcacgatgactaatta |
30 |
Q |
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| T |
16081323 |
caactgagctaagctcacgatgactaatta |
16081294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 18925229 - 18925188
Alignment:
| Q |
116 |
gtggattttaggatgagggttcaattaaatccctcatctatg |
157 |
Q |
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| T |
18925229 |
gtggattctaggatgagagttcaattaaatccctcacctatg |
18925188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 2655728 - 2655765
Alignment:
| Q |
114 |
aagtggattttaggatgagggttcaattaaatccctca |
151 |
Q |
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| T |
2655728 |
aagtggattttaaggtgagggttcaattaaatccctca |
2655765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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