View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19070_high_36 (Length: 210)
Name: NF19070_high_36
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 52068763 - 52068936
Alignment:
| Q |
21 |
ggacgttcattctcaatcttttggtttctgatatctgctgattccaaacacccttctaatgatccaaaactagaacgggaatatgacatagaccctccat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52068763 |
ggacgttcattctcaatcttttggtttctgatatctgctgattccaaacacccttctaatgatccaaaactagaacgggaatatgacatagaccctccat |
52068862 |
T |
|
| Q |
121 |
tcttatcaatcttccttatagtatttcctccaaacccttcacatggctcaatatccatcctttgcctacccttc |
194 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52068863 |
tcttatcaatcttccttacagcatttcctccaaacccttcacatgtctcaatatccatcctttgcctacccttc |
52068936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University