View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19070_high_37 (Length: 208)

Name: NF19070_high_37
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19070_high_37
NF19070_high_37
[»] chr6 (12 HSPs)
chr6 (18-189)||(2935095-2935266)
chr6 (21-189)||(2937959-2938127)
chr6 (20-189)||(2996784-2996953)
chr6 (18-189)||(2929805-2929976)
chr6 (18-189)||(2952432-2952603)
chr6 (23-189)||(2927661-2927827)
chr6 (23-189)||(3003195-3003361)
chr6 (18-184)||(2974503-2974669)
chr6 (60-189)||(2983404-2983533)
chr6 (86-189)||(2965091-2965194)
chr6 (98-189)||(2658384-2658475)
chr6 (19-93)||(2979376-2979450)
[»] scaffold0024 (1 HSPs)
scaffold0024 (19-189)||(34653-34823)
[»] chr7 (1 HSPs)
chr7 (48-189)||(3339551-3339692)
[»] chr3 (2 HSPs)
chr3 (68-189)||(49618957-49619078)
chr3 (40-195)||(49613954-49614109)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2935095 - 2935266
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| |||||||||||| |    
T  2935095 ctaatatcagttctcatttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcaggcgtgattattg 2935194  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  2935195 caaaactccttggcaaactgctgcttccattgctggaatcttactactttttctcactttacttcaatcagt 2935266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 2937959 - 2938127
Alignment:
Q  21 atatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaa 120  Q
    |||||||||||||  ||| |||||| |||||||| |||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2937959 atatcagttctcaattctctattctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactctgaggcgtgattatggcaa 2938058  T
Q  121 aactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  2938059 aactccttggcaaactgctgcttccattgctggaatcttactacttattctcactttacttcaatcagt 2938127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 2996953 - 2996784
Alignment:
Q  20 aatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggca 119  Q
    ||||||||||||||  ||| |||||| ||||| |||||||||||||| ||||  |||| |||| ||||||||||||||||||| ||||||||||||||||    
T  2996953 aatatcagttctcaattctctattctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcaggcgtgattatggca 2996854  T
Q  120 aaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2996853 agactccttggcaagctgctgcttcctttgctggaattgtactacttgttctcacttttattcaatcagt 2996784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2929805 - 2929976
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||| | |||| |||| ||| ||||||||||||||| |||||||||||| |    
T  2929805 ctaatatcagtcctcatttctctattctatgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcaggcgtgattattg 2929904  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
     |  |||||||||||||||||||||||| |||||||| |  |||||||| ||||||||||||||||||||||    
T  2929905 aagtactccttggcaaactgctgcttccattgctggattcttactactttttctcactttacttcaatcagt 2929976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2952432 - 2952603
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||  ||| |||| |  |||||||  ||||||| || |||| ||||| ||||||||||||||| || ||||||||||||||||||||    
T  2952432 ctaatatcagttctcaattctctattattggcaaagaaataaatgcattttgtagtaatccttggaataagttgaaagccactctgaggcgtgattatgg 2952531  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||| ||||    
T  2952532 caaaactccttggcaaactgctgcttccattgctggaatcgtactccttgctctcactttacttcaaacagt 2952603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 2927661 - 2927827
Alignment:
Q  23 atcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaa 122  Q
    |||||||||||  ||| |||||| |||||||||||||||||||  ||||| ||||   |  ||||||||||||||||||| |||||||||||| ||||||    
T  2927661 atcagttctcaattctctattctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcaggcgtgattattgcaaaa 2927760  T
Q  123 ctccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||    
T  2927761 ctccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttcaatcagt 2927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 3003361 - 3003195
Alignment:
Q  23 atcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaa 122  Q
    |||||||||||  ||| ||||||  ||||||||||||||||||  ||||| ||||  ||| ||||||||||||||||||| |||||||||||| ||||||    
T  3003361 atcagttctcaattctctattcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaa 3003262  T
Q  123 ctccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||| |||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||| ||||    
T  3003261 ctccctggcaaactgctgcttccattgctggaatcttactccttgctctcactttacttcaaacagt 3003195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 2974503 - 2974669
Alignment:
Q  18 ctaatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatgg 117  Q
    ||||||||||||||||| ||| |||||| |||||||| || |||||||  ||||  |||| |||| ||| |||||||||| |||| |||||||||||| |    
T  2974503 ctaatatcagttctcatttctctattctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctctaaggcgtgattattg 2974602  T
Q  118 caaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaa 184  Q
    ||| ||||||||||| |||||||||||| ||||||||||| | ||||||||||||||| || |||||    
T  2974603 caatactccttggcacactgctgcttccattgctggaatttttctacttgttctcactataattcaa 2974669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 2983404 - 2983533
Alignment:
Q  60 atgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgt 159  Q
    ||||||| |||||||||| | |||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||| |||||||||| |||||||| |  |    
T  2983404 atgctttttgtaataatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtctt 2983503  T
Q  160 actacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||| || ||||| ||||    
T  2983504 actacttgttctcactataattcaaacagt 2983533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 2965091 - 2965194
Alignment:
Q  86 aagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaat 185  Q
    ||||||||| | ||||||| |||||||||  |||  |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||     
T  2965091 aagttgaagtccactctgatgcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaa 2965190  T
Q  186 cagt 189  Q
    ||||    
T  2965191 cagt 2965194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 2658475 - 2658384
Alignment:
Q  98 actctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    |||||||||||||||||| |||  ||||||||| || ||| ||||||||||||||||||  |||||||| |||||||| || ||||| ||||    
T  2658475 actctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagt 2658384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 2979376 - 2979450
Alignment:
Q  19 taatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaa 93  Q
    |||||||||||||||| ||| |||||| |||||||| ||||||| ||| | || ||||| |||| || |||||||    
T  2979376 taatatcagttctcatttctctattctttgcaaagatttaaatgatttttatagtaatccttggcatgagttgaa 2979450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 34823 - 34653
Alignment:
Q  19 taatatcagttctcatgtctttattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggc 118  Q
    |||||||||||||||| ||| |||||| |||||| |||||||||| || |||| ||||| |||||||| |||||||||| |||| |||||||||||||||    
T  34823 taatatcagttctcatttctctattctttgcaaaaacttaaatgcattttgtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggc 34724  T
Q  119 aaaactccttggcaaactgctgcttcctttgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  34723 aaaactccttggcaaactgctgcttccgttgctggaattttactacttgttctcactttgcttcaatcagt 34653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 3339551 - 3339692
Alignment:
Q  48 gcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctt 147  Q
    ||||||||||||||| ||| ||||| |||| |||| ||| ||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||| |    
T  3339551 gcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccat 3339650  T
Q  148 tgctggaattgtactacttgttctcactttacttcaatcagt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3339651 tgctggaattgtactacttgttctcactttacttcaatcagt 3339692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 49618957 - 49619078
Alignment:
Q  68 tgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttcctttgctggaattgtactacttg 167  Q
    |||||||||| |||| ||||  ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  49618957 tgtaataatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttg 49619056  T
Q  168 ttctcactttacttcaatcagt 189  Q
    ||||| ||||||||||||||||    
T  49619057 ttctctctttacttcaatcagt 49619078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 49613954 - 49614109
Alignment:
Q  40 tattctatgcaaagacttaaatgctttctgtaataatcgttggaataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgct 139  Q
    |||||||||  ||||||| |||| ||| ||| || ||| |||| |||  |||||||| ||||| || ||||||||| |||| | ||||||||||||||||    
T  49613954 tattctatgtgaagacttgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgct 49614053  T
Q  140 gcttcctttgctggaattgtactacttgttctcactttacttcaatcagtctgtgc 195  Q
    |||||| ||||||||||| |||||||| ||||| |||||||||||||||| |||||    
T  49614054 gcttccattgctggaattttactacttattctctctttacttcaatcagtttgtgc 49614109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University