View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_high_5 (Length: 523)
Name: NF19070_high_5
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 179 - 510
Target Start/End: Original strand, 45306445 - 45306772
Alignment:
| Q |
179 |
atacgtcaaatgatttttatctaactaccaaatcattttcttaatttttgaggctaaatactagcttgtactcctttagattgattatcctaatggatgt |
278 |
Q |
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| T |
45306445 |
atacgtcaaatgatttttatctaactaccaaatcattttctttatttttgaggctaaatactagcttgtactcctttagattgattttcctaatggatgt |
45306544 |
T |
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| Q |
279 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactcttttttgtgtagtacttgaaatgtt |
378 |
Q |
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| T |
45306545 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactctattttgtg----acaag-attgtt |
45306639 |
T |
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| Q |
379 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttactt-aaatttttatgcgtaattgctaa |
477 |
Q |
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| T |
45306640 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttacttaaaaattttatgcgtaattgctaa |
45306739 |
T |
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| Q |
478 |
ttttatttgttaatttgattgtgtaggatgatg |
510 |
Q |
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| T |
45306740 |
ttttatttgttaatttgattatgtaggatgatg |
45306772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45306270 - 45306365
Alignment:
| Q |
1 |
acttgtaattgctgttatttttt-actctcttaaatgagctagttttgtgtgtgtctgtggttgaggtttgattcctttgttaccactctagaacgacgg |
99 |
Q |
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| T |
45306270 |
acttgtaattgctgttatttttttactctcttaaatgtactagttttgtgtgtgt----ggttgaggtttgattcctttgttaccactctagaacgacgg |
45306365 |
T |
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