View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_high_8 (Length: 473)
Name: NF19070_high_8
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 35902449 - 35902241
Alignment:
| Q |
8 |
agataatactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatccagagtactctaaagatattcttttgtttcttatcgat |
107 |
Q |
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| T |
35902449 |
agataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatccagagtactctaaagatattcttttgtttcttatcgat |
35902350 |
T |
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| Q |
108 |
cgtctcatccaacgtaatttcatcaaggtatgtccaatatatttctagttttatttagagaatttcaattttctattactttagagcacgtcgaccatca |
207 |
Q |
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| T |
35902349 |
cgtctcatccaacgtaatttcatcaaggtatgtcca----atttctagttttatttagagaatttcaattttctattactttagagcacgtcgaccatca |
35902254 |
T |
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| Q |
208 |
taaagaactagga |
220 |
Q |
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| T |
35902253 |
taaagaactagga |
35902241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 271 - 455
Target Start/End: Complemental strand, 35902245 - 35902061
Alignment:
| Q |
271 |
taggtttacgtggtaattgatctcgatcgttgatctgagatcgaacaatctggattacactatcaatttcaagcaccatttcttccattaacttgaatta |
370 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
35902245 |
taggattacgtggtaattgatctcgatcgttgatctgagatcgaacaatctggattacactatcaatttcaagcaccgtctcttccattaacttgaatta |
35902146 |
T |
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| Q |
371 |
tattttgaattgattgatttactcatagaggatgtctaaaatgtcaggaagcttttgctataggagcgagggagagggctcattt |
455 |
Q |
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| T |
35902145 |
tattttgaattgattgatttactcatagaggatgtcttaaatgtcaggaagcttttgctataggagcgagggagagggctcattt |
35902061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 37024484 - 37024571
Alignment:
| Q |
8 |
agataatactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatccagagtactctaaagatattcttttg |
95 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||| |
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| T |
37024484 |
agataagactggaattgagatgtttagatatggagatcacattatgggaattcaaggtcatcctgagtactctaaagacatccttttg |
37024571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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