View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19070_high_9 (Length: 451)
Name: NF19070_high_9
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 44151444 - 44151064
Alignment:
| Q |
10 |
aaatgaaggaaatgtgttgggtaccgaccgccaatgaatgggaaacacgtggagtaggagggaataggaatggggtg----ggacccaataaggttactt |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44151444 |
aaatgaaggaaatgtgttgggtaccg----ccaatgaatgggaaacacgtggagtaggagggaataggaatggggtgtgtgggacccaataaggttactt |
44151349 |
T |
|
| Q |
106 |
tttggtgggaatgattgtgaagcgtcagatgaggtttgactgttagtgttgagtgatatctgtatggggaagagagaagcatgtgacttcatctttactg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44151348 |
tttggtgggaatgattgtgaagcgtcagatgaggtttgactgtttgtgttgagtgatatctgtatggggaagagagaagcatgtgacttcatctttactg |
44151249 |
T |
|
| Q |
206 |
gttggattctaagtaactggactagttaggagtagttactaattcccgtggttttttcagataagttgagttattcacgtgattggttttctaataaaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44151248 |
gttggattctaagtaactggactagttaggagtagttactaattcccgtggttttttcagataagttgagttattcacgtgattggttttctaataaaga |
44151149 |
T |
|
| Q |
306 |
agacttgtttaaattttgtcacaaaaaatcaaatgaaaattgggtttcattaactattttttagttgggcaacaagaataaacaa |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44151148 |
agacttgtttaaattttgtcacaaaaaatcaaatgaaaattgggtttcattaattattttttagttgggcaacaagaataaacaa |
44151064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 44151041 - 44150995
Alignment:
| Q |
389 |
aagataatttcaatagcaactaccaattcatcatgcttcgaaatgga |
435 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44151041 |
aagatagtttcaatagcaactaccaattgatcatgcttcgaaatgga |
44150995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University