View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_1 (Length: 685)
Name: NF19070_low_1
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 21077918 - 21078590
Alignment:
| Q |
18 |
cttcattggtttttctttttccttcattctttcaaaccctaatttctttcattccacagcagccatagagaagaacatcatcatca---cgatcatgaag |
114 |
Q |
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| T |
21077918 |
cttcattggtttttctttttcctttattctttcaaaccctagtttctttcttttcacagccgccatcgagaagaacatcatcatcatcacgatcatgaag |
21078017 |
T |
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| Q |
115 |
aaacatttttctcatcgttcttgttacgacaaccataaacaacaacaacaaaagaaagaatatgatcac------------gatgagcagaaaaagaata |
202 |
Q |
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| T |
21078018 |
aaacatttttctcttcgttcttgttacgacaaccataaacaacaacatcaaaagaaagaatatgatcaccatgatgctactgatgatcagaaaaagaata |
21078117 |
T |
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| Q |
203 |
ttggttgtttaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggtggccacaaatcacatcaccaccgctc |
302 |
Q |
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| T |
21078118 |
ttggttgttcaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggcggccacaaatcacatcaccaccgctc |
21078217 |
T |
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| Q |
303 |
tgatcaccttgttcaacaacctctgaccaagaaacataaacatgatgttcttgatgatcataggaagcagaagcatgcttttcttgaccatgataaggtt |
402 |
Q |
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| T |
21078218 |
tgatcaccttgttcaacaacctctgaccaagaaacagaaacatgatgttcttgatgatcataggaagcagaagcatgcatttcttgactatgataaggtt |
21078317 |
T |
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| Q |
403 |
tttccttccaacatgagatcgcaccgcgaaaagggtattgagtctccaaccacatccttcttccctgtctccttcttggagcaacagagtgatatgtgtg |
502 |
Q |
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| T |
21078318 |
tttccgtccaacatgagatcgcactgcgaaaagggtattgagtctccgaccacatccttcttccctgtctccttcttggagcaacagagtgatatgtgtg |
21078417 |
T |
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| Q |
503 |
atcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatattttcctccaagttcccataaaaagaaaaagcgcagcatcgtgag |
602 |
Q |
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| T |
21078418 |
atcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatatttgcctccaagttcccataaaaagaaaaaacgcagcatcgtgag |
21078517 |
T |
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| Q |
603 |
aagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggt |
675 |
Q |
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| T |
21078518 |
aagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggt |
21078590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 660
Target Start/End: Complemental strand, 3073780 - 3073724
Alignment:
| Q |
604 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
660 |
Q |
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| T |
3073780 |
agaaatatcattgatcatgaacatcttaatggagcatatacactcttcgatatgtct |
3073724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 660
Target Start/End: Complemental strand, 27732144 - 27732088
Alignment:
| Q |
604 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
660 |
Q |
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| T |
27732144 |
agaaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtct |
27732088 |
T |
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