View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19070_low_11 (Length: 442)
Name: NF19070_low_11
Description: NF19070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19070_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 798748 - 799146
Alignment:
| Q |
22 |
gaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactcctannnnnnnnnnnnnnnnnnattttggttcgattttaacaatggttaa |
121 |
Q |
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| T |
798748 |
gaagcatcaacaaacttgattccaagcttcctagccctccaatggtgactcctgctctctgtctctctctctattttggttcgattttaacaattgttaa |
798847 |
T |
|
| Q |
122 |
ctttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcctagccaactgaagtttcttctgtc |
221 |
Q |
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|||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
798848 |
ctttacagaaatgacatacaccttaatttatacaggtacataaatgttaacttctctaggaaaagtaaggcccgcctagccaactgaagtttcttctgtt |
798947 |
T |
|
| Q |
222 |
gaggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcaag |
321 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
798948 |
gaggaaaaacaagttgtcttcagatattttcttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcgag |
799047 |
T |
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| Q |
322 |
aactccgttttggctcccattcacctagctcagctcgccaagtgaatcaggcttttcaccagatgtctcatatgatccgccctaacttctagcgcatgtg |
421 |
Q |
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| T |
799048 |
gactccgttttggc-----ttcacctagctcagctcgccaagcgaatcaagcttttcaccagatgtctcatatgatctgccctaacttctagcgcatgtg |
799142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 25034929 - 25034697
Alignment:
| Q |
94 |
attttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcc |
193 |
Q |
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| T |
25034929 |
attttggttcggtttta-caatggctaattctactgaattgacctacacctctatttatagaggtcttgaaatgttaagttcgttaggagaagtaaggat |
25034831 |
T |
|
| Q |
194 |
cgcctagccaactgaagtttcttctgtcg-aggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcct |
292 |
Q |
| |
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| | |||| || || ||||| ||| | | |||||||| |||||| ||| |||||| | | |||||||||||||| | ||| ||||| ||||||| | |
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| T |
25034830 |
cacttagcgaatcgaggtttcatctttgggaggaaaaatcagttgtgttcggatattttcataaaccaccttagttcgcttagcagaccacatctcgctt |
25034731 |
T |
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| Q |
293 |
agcaaaccgactttggcttttccttcaagaactc |
326 |
Q |
| |
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| T |
25034730 |
atcaaaccacctttggcttttccttctagaactc |
25034697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 25035009 - 25034956
Alignment:
| Q |
19 |
ggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc |
72 |
Q |
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|
|||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
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|
| T |
25035009 |
ggagaagcatcaacaagcttgattccaatcttcctaaacctccaatggtgactc |
25034956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 44119144 - 44119095
Alignment:
| Q |
22 |
gaagcatcaacaaacttgattccaagcttccttgccctccaatggtgact |
71 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
44119144 |
gaagcgtcaacaagcttgatttcaagcttcctagccctccaatggtgact |
44119095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 7395345 - 7395398
Alignment:
| Q |
19 |
ggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc |
72 |
Q |
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|
|||||||||||||||| |||||||||||| ||||| ||||| |||||||||||| |
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| T |
7395345 |
ggagaagcatcaacaagcttgattccaagattcctagcccttcaatggtgactc |
7395398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 29020811 - 29020859
Alignment:
| Q |
20 |
gagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg |
68 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| |||||||||||||| |
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|
| T |
29020811 |
gagaagcatgaacaagcttgtctccaagcttcctagccctccaatggtg |
29020859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 268
Target Start/End: Complemental strand, 10583527 - 10583387
Alignment:
| Q |
129 |
gaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcctagccaactgaagtttcttctgtcga-ggaa |
227 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| | ||||||||| ||| ||| | ||| |||||| |||||| || || ||||||||| | || |||| |
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| T |
10583527 |
gaaatgacgtacacctttatttatagaggttttgaaatgttaagttcactatgcaaaataaggctttcctagcaaatcgaggtttcttctttggagggaa |
10583428 |
T |
|
| Q |
228 |
aaacaagttgtcttcaaatatttccttgaaccaccttagtt |
268 |
Q |
| |
|
|||| ||||||||| |||||| || ||||||| |||||| |
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| T |
10583427 |
aaaccagttgtcttatgatattttctggaaccacgttagtt |
10583387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 24967968 - 24968105
Alignment:
| Q |
235 |
ttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcaagaa--ctccgtttt |
332 |
Q |
| |
|
||||||||| |||||| |||||||| | ||||||| | |||| || ||||||| | ||| | || || ||||||||||| |||| | || ||| |||| |
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| T |
24967968 |
ttgtcttcatatattttcttgaaccgcattagttcgcttagaagatcaaatctagtctaacgaaacgcctttggctttttcttctaaaactctctatttt |
24968067 |
T |
|
| Q |
333 |
ggctcccattcacctagctcagctcgccaagtgaatca |
370 |
Q |
| |
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||||| |||||||| |||||||||||| || |||||| |
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| T |
24968068 |
ggctcttattcacctcgctcagctcgcctagcgaatca |
24968105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 12830986 - 12831079
Alignment:
| Q |
224 |
ggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttcctt |
317 |
Q |
| |
|
|||||||| ||||| ||||| |||||| |||||||| ||||||| | || ||||||||||||||||||| || | || |||||||||||| |
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|
| T |
12830986 |
ggaaaaaccagttgacttcagatattttcttgaaccgatttagttctcttaacggaccaaatctcgcctagcgaaatgtctctggcttttcctt |
12831079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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